Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

34170795 .. 34174454

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATAATACTCAAAGAAGACGTATCAGACTTGAAAACAAAAACAGAAGAAAAGAAATGTCGTGGTACTAGAGATAAATGTGAACGGGTGGGAAATCTATGTACTATTCCCTTTGACTCCACTGGCGGACCCATGGCACCGCCACCACCACTATCGTCGGAGACGGCAAGCCAGCGATGGAGGAGATTGTGTGGCCTCCTCAAGAACCGCAAGCCAAGCAAGGAGGAGAAGTTTGGACTCCGTGTTGCAGTGCTGAGTATATATGCAAAATACCAATTTATCAACGGAATAGACAATCTAGATCTAGATAGTCAGGACGAGGAACAGACAGAGACAACAGAGGAAGCAAATGTTCCAAGCAGGTATTACTGTTATCAGTGTCGTCAAGTGGTCAGTGTCACTGTGGATGTCGAAATGACATGCCCTCTCGGCCATGGCGGCTGGATACAAGAATGTAGTACCGTTGGCCTACTCTATCTTACTATGCCATCAGAATCTGAGCATTCTGCTAGTGATTCTGATGGACAGGGCACCATTCTGATCCATCCTTCCAGTCCAACTGTCATAGACATTGTCGAGGACAGCTATGGTTCAGATCCCAACCCCAACAGGTCCCCTTTTCATAGCACTGGTTTGTATGATTACAACAACTATGACGAGTCACACCAGGCAACGGGCAATTATGATTCTAGTTTGGAACAGGGATTCCTTACACTTAGCATTGATGCAGATATTGTTGCTAACCAGCCTCATCATGGGACAGGGGTTACTACATCAGTCTGGATCTTTTCAGCCACTGGTTTCGCCTTTGAGGCTGTATCGGCATTTTTCGATCAGGTTTCCACCCCACGGAAGCCTCAATACTCATTGTATGGCATGCTGTTGTCCATCGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCACAATGCCCTGATACAAAGACAAAGAGGACTCACATCTGTGAGTAACATTCTTTGGGATATCTTGCCCGAAATTTTTGGTTTAGCTCTCGCATGTATTCAATGCATTAGCTCGGGACTGCAGTTTTTATTTATCTATAGGCATGCTGCTAATCCTATGAAAATATCGCTTCTGCCTTTCTTATTTTTCTTCGTTTTGTTTGCTTTCAAATATAGAGAAGGAAGGAATAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

FNIP LRR_8 NB-ARC

Protein Analysis

386

Amino Acids

43.03

Weight (kDa)

5.24

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	136, 530
AciI	CCGC	4 cut(s)	126, 140, 208, 438
AclWI	GGATC	3 cut(s)	535, 590, 791
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	996
AfaI	GTAC	4 cut(s)	67, 103, 460, 900
AfiI	CCNNNNNNNGG	3 cut(s)	673, 755, 849
AgsI	TTSAA	3 cut(s)	34, 1025, 1132
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	962
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
AluBI	AGCT	3 cut(s)	585, 1010, 1035
AluI	AGCT	3 cut(s)	585, 1010, 1035
Alw26I	GTCTC	2 cut(s)	155, 326
AlwI	GGATC	3 cut(s)	535, 590, 791
AlwNI	CAGNNNCTG	2 cut(s)	497, 797
Ama87I	CYCGRG	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	193, 430, 466
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	1 cut(s)	996
AspS9I	GGNCC	3 cut(s)	128, 612, 916
AvaI	CYCGRG	1 cut(s)	1036
AvaII	GGWCC	3 cut(s)	128, 612, 916
BaeGI	GKGCMC	1 cut(s)	533
BanI	GGYRCC	2 cut(s)	136, 530
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	5 cut(s)	171, 496, 515, 552, 896
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	668
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	155, 326
BfaI	CTAG	5 cut(s)	69, 299, 305, 510, 690
BfmI	CTRYAG	2 cut(s)	1043, 1060
BfuAI	ACCTGC	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	438
BglI	GCCNNNNNGGC	3 cut(s)	429, 438, 812
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	439, 1071
BlsI	GCNGC	2 cut(s)	440, 1072
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	3 cut(s)	128, 612, 916
BmeT110I	CYCGRG	1 cut(s)	1036
BmgT120I	GGNCC	3 cut(s)	128, 612, 916
BmiI	GGNNCC	4 cut(s)	130, 138, 532, 614
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	2 cut(s)	715, 918
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	132, 433, 848
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 755, 849
Bse1I	ACTGG	4 cut(s)	127, 552, 634, 802
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	3 cut(s)	132, 433, 848
BseGI	GGATG	2 cut(s)	412, 544
BseLI	CCNNNNNNNGG	3 cut(s)	673, 755, 849
BseMII	CTCAG	2 cut(s)	245, 489
BseNI	ACTGG	4 cut(s)	127, 552, 634, 802
BseRI	GAGGAG	3 cut(s)	188, 196, 239
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	195, 432, 468
BshNI	GGYRCC	2 cut(s)	136, 530
BsiHKCI	CYCGRG	1 cut(s)	1036
BslFI	GGGAC	3 cut(s)	598, 772, 1053
BslI	CCNNNNNNNGG	3 cut(s)	673, 755, 849
BsmAI	GTCTC	2 cut(s)	155, 326
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	3 cut(s)	598, 772, 1053
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	3 cut(s)	195, 432, 468
BsoBI	CYCGRG	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	5 cut(s)	301, 540, 595, 783, 832
Bsp19I	CCATGG	2 cut(s)	132, 433
BspACI	CCGC	4 cut(s)	126, 140, 208, 438
BspANI	GGCC	3 cut(s)	195, 432, 468
BspCNI	CTCAG	2 cut(s)	246, 490
BspLI	GGNNCC	4 cut(s)	130, 138, 532, 614
BspMAI	CTGCAG	1 cut(s)	1047
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	535, 590, 791
BspT107I	GGYRCC	2 cut(s)	136, 530
BsrI	ACTGG	4 cut(s)	127, 552, 634, 802
BssECI	CCNNGG	3 cut(s)	132, 433, 848
BssMI	GATC	5 cut(s)	301, 540, 595, 783, 832
BssT1I	CCWWGG	2 cut(s)	132, 433
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	371, 403, 463, 562
BstC8I	GCNNGC	5 cut(s)	169, 173, 212, 878, 1068
BstDEI	CTNAG	3 cut(s)	254, 498, 716
BstDSI	CCRYGG	3 cut(s)	132, 433, 848
BstF5I	GGATG	2 cut(s)	412, 544
BstKTI	GATC	5 cut(s)	304, 543, 598, 786, 835
BstMAI	GTCTC	2 cut(s)	155, 326
BstMBI	GATC	5 cut(s)	301, 540, 595, 783, 832
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 438, 812, 821
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	4 cut(s)	423, 880, 1020, 1070
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	1043, 1060
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	1057
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	3 cut(s)	301, 595, 783
BstYI	RGATCY	3 cut(s)	301, 595, 783
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	195, 432, 468
BtgI	CCRYGG	3 cut(s)	132, 433, 848
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	412, 544
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	7 cut(s)	120, 255, 383, 399, 400, 627, 795
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	5 cut(s)	169, 173, 212, 878, 1068
CaiI	CAGNNNCTG	2 cut(s)	497, 797
Cfr13I	GGNCC	3 cut(s)	128, 612, 916
Csp6I	GTAC	4 cut(s)	66, 102, 459, 899
CviAII	CATG	7 cut(s)	133, 420, 434, 755, 877, 1017, 1067
CviQI	GTAC	4 cut(s)	66, 102, 459, 899
DdeI	CTNAG	3 cut(s)	254, 498, 716
DpnI	GATC	5 cut(s)	303, 542, 597, 785, 834
DpnII	GATC	5 cut(s)	301, 540, 595, 783, 832
EaeI	YGGCCR	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	132, 433
Eco32I	GATATC	1 cut(s)	985
Eco47I	GGWCC	3 cut(s)	128, 612, 916
Eco88I	CYCGRG	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	2 cut(s)	132, 433
EcoT22I	ATGCAT	1 cut(s)	1031
ErhI	CCWWGG	2 cut(s)	132, 433
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	7 cut(s)	136, 423, 437, 758, 880, 1020, 1070
FaqI	GGGAC	3 cut(s)	598, 772, 1053
FatI	CATG	7 cut(s)	132, 419, 433, 754, 876, 1016, 1066
Fnu4HI	GCNGC	2 cut(s)	439, 1071
FokI	GGATG	2 cut(s)	419, 531
Fsp4HI	GCNGC	2 cut(s)	439, 1071
FspBI	CTAG	5 cut(s)	69, 299, 305, 510, 690
GluI	GCNGC	2 cut(s)	439, 1071
HaeIII	GGCC	3 cut(s)	195, 432, 468
Hin1II	CATG	7 cut(s)	136, 423, 437, 758, 880, 1020, 1070
HinfI	GANTC	8 cut(s)	116, 237, 494, 515, 659, 686, 705, 954
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	7 cut(s)	28, 160, 493, 499, 520, 540, 595
Hpy188III	TCNNGA	6 cut(s)	202, 299, 305, 314, 781, 1038
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	558, 1136, 1140
HpyCH4III	ACNGT	4 cut(s)	371, 403, 463, 562
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	248, 266, 728, 909, 1029, 1045
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 438, 812, 821
HpyF3I	CTNAG	3 cut(s)	254, 498, 716
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	136, 423, 437, 758, 880, 1020, 1070
Kzo9I	GATC	5 cut(s)	301, 540, 595, 783, 832
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	2 cut(s)	715, 918
MaeI	CTAG	5 cut(s)	69, 299, 305, 510, 690
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	4 cut(s)	397, 660, 766, 968
MalI	GATC	5 cut(s)	303, 542, 597, 785, 834
MboI	GATC	5 cut(s)	301, 540, 595, 783, 832
MboII	GAAGA	3 cut(s)	29, 59, 1105
MflI	RGATCY	3 cut(s)	301, 595, 783
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	3 cut(s)	275, 679, 996
MlyI	GAGTC	4 cut(s)	110, 231, 668, 948
MmeI	TCCRAC	2 cut(s)	138, 581
Mph1103I	ATGCAT	1 cut(s)	1031
MslI	CAYNNNNRTG	1 cut(s)	962
MspR9I	CCNGG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 438, 812, 821
NcoI	CCATGG	2 cut(s)	132, 433
NdeII	GATC	5 cut(s)	301, 540, 595, 783, 832
NlaIII	CATG	7 cut(s)	136, 423, 437, 758, 880, 1020, 1070
NlaIV	GGNNCC	4 cut(s)	130, 138, 532, 614
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	397, 660
NsiI	ATGCAT	1 cut(s)	1031
NspI	RCATGY	4 cut(s)	423, 880, 1020, 1070
OliI	CACNNNNGTG	1 cut(s)	962
PaeI	GCATGC	2 cut(s)	880, 1070
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	4 cut(s)	494, 515, 686, 705
PflFI	GACNNNGTC	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	440, 1072
PleI	GAGTC	4 cut(s)	110, 231, 667, 948
PpsI	GAGTC	4 cut(s)	110, 231, 667, 948
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	4 cut(s)	130, 138, 532, 614
PspPI	GGNCC	3 cut(s)	128, 612, 916
PspPPI	RGGWCCY	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	1047
PstNI	CAGNNNCTG	2 cut(s)	497, 797
PsuI	RGATCY	3 cut(s)	301, 595, 783
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	4 cut(s)	67, 103, 460, 900
RsaNI	GTAC	4 cut(s)	66, 102, 459, 899
RseI	CAYNNNNRTG	1 cut(s)	962
SatI	GCNGC	2 cut(s)	439, 1071
Sau3AI	GATC	5 cut(s)	301, 540, 595, 783, 832
Sau96I	GGNCC	3 cut(s)	128, 612, 916
SchI	GAGTC	4 cut(s)	110, 231, 668, 948
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	533
SetI	ASST	9 cut(s)	24, 365, 587, 614, 840, 921, 1012, 1037, 1159
SfaNI	GCATC	2 cut(s)	715, 918
SfcI	CTRYAG	2 cut(s)	1043, 1060
SinI	GGWCC	3 cut(s)	128, 612, 916
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	2 cut(s)	880, 1070
Sse9I	AATT	3 cut(s)	275, 679, 996
SsiI	CCGC	4 cut(s)	126, 140, 208, 438
SspMI	CTAG	5 cut(s)	69, 299, 305, 510, 690
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	2 cut(s)	132, 433
TaaI	ACNGT	4 cut(s)	371, 403, 463, 562
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	411, 576, 831
TasI	AATT	3 cut(s)	275, 679, 996
TatI	WGTACW	2 cut(s)	101, 898
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	4 cut(s)	494, 515, 686, 705
TscAI	CASTG	7 cut(s)	127, 255, 383, 400, 406, 634, 802
TseFI	GTSAC	2 cut(s)	397, 660
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	2 cut(s)	397, 660
TspDTI	ATGAA	2 cut(s)	611, 1097
TspGWI	ACGGA	3 cut(s)	230, 300, 865
TspRI	CASTG	7 cut(s)	127, 255, 383, 400, 406, 634, 802
Tth111I	GACNNNGTC	1 cut(s)	572
VpaK11BI	GGWCC	3 cut(s)	128, 612, 916
XapI	RAATTY	1 cut(s)	996
XbaI	TCTAGA	2 cut(s)	298, 304
XceI	RCATGY	4 cut(s)	423, 880, 1020, 1070
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XspI	CTAG	5 cut(s)	69, 299, 305, 510, 690
Zsp2I	ATGCAT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.