Rh5AG266100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002406
Physical Location & Seq
Reverse (-)
35019339 .. 35020623
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG266100.1

Sequence Viewer

Length: 603 bp
ATGGAGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGAATTGTTCCGCACCGTCCACTTTGCAATCTTGACCTTATATGCTGCATGGCAATTTAGGAAAGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGAAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGTTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCTGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGAACAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTAAGGGTCGGACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.93

Weight (kDa)

5.31

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 490
AciI CCGC 2 cut(s) 64, 474
AfiI CCNNNNNNNGG 1 cut(s) 490
AjnI CCWGG 3 cut(s) 51, 483, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 98, 192
AspLEI GCGC 1 cut(s) 490
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 29, 200, 547
BbvI GCAGC 2 cut(s) 85, 204
BccI CCATC 2 cut(s) 119, 530
BciT130I CCWGG 3 cut(s) 53, 485, 573
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 137, 513
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 186
BisI GCNGC 3 cut(s) 99, 193, 475
BlsI GCNGC 3 cut(s) 100, 194, 476
Bme1390I CCNGG 4 cut(s) 53, 389, 485, 573
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 4 cut(s) 53, 389, 485, 573
BmsI GCATC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 389
BsaJI CCNNGG 5 cut(s) 42, 51, 256, 357, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 3 cut(s) 53, 485, 573
BseDI CCNNGG 5 cut(s) 42, 51, 256, 357, 445
BseGI GGATG 2 cut(s) 37, 235
BseLI CCNNNNNNNGG 1 cut(s) 490
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 85, 204
BshFI GGCC 1 cut(s) 576
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 2 cut(s) 206, 371
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 206, 371
BsnI GGCC 1 cut(s) 576
Bsp143I GATC 1 cut(s) 544
Bsp19I CCATGG 2 cut(s) 42, 357
BspACI CCGC 2 cut(s) 64, 474
BspANI GGCC 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 5 cut(s) 42, 51, 256, 357, 445
BssMI GATC 1 cut(s) 544
BssT1I CCWWGG 4 cut(s) 42, 256, 357, 445
Bst2UI CCWGG 3 cut(s) 53, 485, 573
Bst4CI ACNGT 4 cut(s) 70, 143, 206, 385
BstC8I GCNNGC 2 cut(s) 492, 569
BstDSI CCRYGG 2 cut(s) 42, 357
BstF5I GGATG 2 cut(s) 37, 235
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 2 cut(s) 471, 573
BstNI CCWGG 3 cut(s) 53, 485, 573
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 4 cut(s) 51, 387, 483, 571
BstV1I GCAGC 2 cut(s) 85, 204
BsuRI GGCC 1 cut(s) 576
BtgI CCRYGG 2 cut(s) 42, 357
BtsCI GGATG 2 cut(s) 37, 235
BtsIMutI CAGTG 2 cut(s) 218, 339
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 492, 569
CaiI CAGNNNCTG 1 cut(s) 490
CfoI GCGC 1 cut(s) 490
CviAII CATG 9 cut(s) 43, 102, 278, 307, 358, 455, 497, 548, 578
CviJI RGCY 6 cut(s) 261, 291, 325, 444, 540, 576
CviKI_1 RGCY 6 cut(s) 261, 291, 325, 444, 540, 576
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraI TTTAAA 1 cut(s) 132
Eco130I CCWWGG 4 cut(s) 42, 256, 357, 445
EcoRII CCWGG 3 cut(s) 51, 483, 571
EcoT14I CCWWGG 4 cut(s) 42, 256, 357, 445
ErhI CCWWGG 4 cut(s) 42, 256, 357, 445
FaeI CATG 9 cut(s) 46, 105, 281, 310, 361, 458, 500, 551, 581
FaqI GGGAC 2 cut(s) 206, 371
FatI CATG 9 cut(s) 42, 101, 277, 306, 357, 454, 496, 547, 577
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 99, 193, 475
FokI GGATG 2 cut(s) 24, 242
Fsp4HI GCNGC 3 cut(s) 99, 193, 475
FspBI CTAG 2 cut(s) 137, 513
GlaI GCGC 1 cut(s) 489
GluI GCNGC 3 cut(s) 99, 193, 475
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 1 cut(s) 576
HapII CCGG 1 cut(s) 389
HhaI GCGC 1 cut(s) 490
Hin1II CATG 9 cut(s) 46, 105, 281, 310, 361, 458, 500, 551, 581
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 2 cut(s) 317, 503
HpaII CCGG 1 cut(s) 389
HphI GGTGA 3 cut(s) 29, 200, 547
Hpy166II GTNNAC 2 cut(s) 73, 400
Hpy188I TCNGA 4 cut(s) 316, 322, 544, 593
Hpy188III TCNNGA 3 cut(s) 85, 137, 146
Hpy8I GTNNAC 2 cut(s) 73, 400
HpyAV CCTTC 2 cut(s) 336, 381
HpyCH4III ACNGT 4 cut(s) 70, 143, 206, 385
HpyCH4V TGCA 5 cut(s) 80, 101, 298, 332, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 471, 573
Hsp92II CATG 9 cut(s) 46, 105, 281, 310, 361, 458, 500, 551, 581
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 85, 204
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 137, 513
MaeIII GTNAC 3 cut(s) 206, 335, 553
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MluCI AATT 2 cut(s) 56, 107
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 4 cut(s) 294, 404, 531, 571
MnlI CCTC 4 cut(s) 166, 258, 312, 378
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 213, 282
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 4 cut(s) 53, 389, 485, 573
MvaI CCWGG 3 cut(s) 53, 485, 573
MwoI GCNNNNNNNGC 2 cut(s) 471, 573
NciI CCSGG 1 cut(s) 389
NcoI CCATGG 2 cut(s) 42, 357
NdeII GATC 1 cut(s) 544
NlaIII CATG 9 cut(s) 46, 105, 281, 310, 361, 458, 500, 551, 581
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 3 cut(s) 206, 335, 553
NspI RCATGY 1 cut(s) 310
OliI CACNNNNGTG 1 cut(s) 213
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 3 cut(s) 100, 194, 476
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 3 cut(s) 51, 483, 571
PspGI CCWGG 3 cut(s) 51, 483, 571
PspN4I GGNNCC 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 490
RseI CAYNNNNRTG 2 cut(s) 213, 282
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 3 cut(s) 99, 193, 475
Sau3AI GATC 1 cut(s) 544
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 4 cut(s) 53, 389, 485, 573
SetI ASST 3 cut(s) 92, 200, 293
SfaNI GCATC 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 213, 282
Sse9I AATT 2 cut(s) 56, 107
SsiI CCGC 2 cut(s) 64, 474
SspMI CTAG 2 cut(s) 137, 513
StyD4I CCNGG 4 cut(s) 51, 387, 483, 571
StyI CCWWGG 4 cut(s) 42, 256, 357, 445
TaaI ACNGT 4 cut(s) 70, 143, 206, 385
TaqII GACCGA 1 cut(s) 507
TasI AATT 2 cut(s) 56, 107
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 2 cut(s) 218, 346
TseFI GTSAC 3 cut(s) 206, 335, 553
TseI GCWGC 2 cut(s) 98, 192
Tsp45I GTSAC 3 cut(s) 206, 335, 553
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 2 cut(s) 218, 346
Van91I CCANNNNNTGG 1 cut(s) 490
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 310
XspI CTAG 2 cut(s) 137, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.