Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

59629617 .. 59632186

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACATGCCCTCTTTGCCAAGGCTGCTTTATGGAAGAATGTAGTGGTGCCATGCAGTCGGAGTCAGAGCCTTCTGCAAGGGACTCTGATGGGCATGGTGCCATGGTAATCCCTTCTTCCAATCAAACAGTCCTGGACATTGTCGAGAACAACAATGGTTCAGCGCCAAATAGATCCCCTTTTCATAGCCTCGGTTCCCATGATTACGACAACTATGGCGAGACACACCAGGCAGCAGGGCACGGTGGTTCCAACCATAGTCAGATACTTGTACTTGTCATTGGCTCTGATCATGCTGTGACCAGCAATAGCGTTAGCGTGCCAGGCCATGTGGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCAGCCACATCATGGGACAAGGATTACTTCATCCGTCTGCATCTTTTCAGCAACTGGTTTCGGCTTTGAGGCTGTTTCAGCATTTTTTGATCAGGTTTCCACCCCTTGGAAGACTCGTTATGCATTATATGGCATGCTTTTGTCTATTGTGGCTGTACTTGTCTGCATCTTGGACCTCATTCTCAATGCCATGAAACAAAGAAGAATCACGTCTAAGAGTAACAGACTTTGGGGTATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTGCATTAGCTCGGCACTGCAGTATTCATTTCTCTGCAGGCATGCTGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCCTGTTTGCTTTCAAATATAGGAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

28.87

Weight (kDa)

6.58

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	47, 98
AccB7I	CCANNNNNTGG	2 cut(s)	413, 507
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	273, 558
AfiI	CCNNNNNNNGG	3 cut(s)	360, 413, 507
AgsI	TTSAA	3 cut(s)	348, 736, 784
AjiI	CACGTC	1 cut(s)	612
AjnI	CCWGG	3 cut(s)	132, 228, 322
AluBI	AGCT	2 cut(s)	662, 687
AluI	AGCT	2 cut(s)	662, 687
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	325, 394
ApeKI	GCWGC	3 cut(s)	24, 233, 722
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	334, 395, 574
AvaII	GGWCC	2 cut(s)	334, 574
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	2 cut(s)	47, 98
BauI	CACGAG	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	11, 245, 709
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	134, 230, 324
BciVI	GTATCC	1 cut(s)	751
BclI	TGATCA	2 cut(s)	289, 490
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	2 cut(s)	695, 712
BfoI	RGCGCY	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	3 cut(s)	25, 234, 723
BlsI	GCNGC	3 cut(s)	26, 235, 724
Bme1390I	CCNGG	3 cut(s)	134, 230, 324
Bme18I	GGWCC	2 cut(s)	334, 574
BmgBI	CACGTC	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	334, 395, 574
BmiI	GGNNCC	5 cut(s)	49, 100, 196, 250, 336
BmrFI	CCNGG	3 cut(s)	134, 230, 324
BmsI	GCATC	2 cut(s)	450, 576
BpiI	GAAGAC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	19, 102, 190, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 413, 507
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	3 cut(s)	134, 230, 324
BseDI	CCNNGG	4 cut(s)	19, 102, 190, 506
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	3 cut(s)	360, 413, 507
BseNI	ACTGG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	11, 245, 709
BshFI	GGCC	2 cut(s)	327, 396
BshNI	GGYRCC	2 cut(s)	47, 98
BslFI	GGGAC	3 cut(s)	95, 320, 430
BslI	CCNNNNNNNGG	3 cut(s)	360, 413, 507
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	3 cut(s)	95, 320, 430
BsnI	GGCC	2 cut(s)	327, 396
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	173, 289, 490
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	2 cut(s)	327, 396
BspLI	GGNNCC	5 cut(s)	49, 100, 196, 250, 336
BspMAI	CTGCAG	2 cut(s)	699, 716
BspPI	GGATC	1 cut(s)	168
BspT107I	GGYRCC	2 cut(s)	47, 98
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	4 cut(s)	19, 102, 190, 506
BssMI	GATC	3 cut(s)	173, 289, 490
BssSI	CACGAG	1 cut(s)	746
BssT1I	CCWWGG	3 cut(s)	19, 102, 506
Bst2BI	CACGAG	1 cut(s)	746
Bst2UI	CCWGG	3 cut(s)	134, 230, 324
Bst4CI	ACNGT	2 cut(s)	130, 245
BstC8I	GCNNGC	4 cut(s)	320, 536, 716, 720
BstDEI	CTNAG	1 cut(s)	615
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	176, 292, 493
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	173, 289, 490
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 24, 324, 479
BstNI	CCWGG	3 cut(s)	134, 230, 324
BstNSI	RCATGY	3 cut(s)	9, 538, 722
BstSCI	CCNGG	3 cut(s)	132, 228, 322
BstSFI	CTRYAG	2 cut(s)	695, 712
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	11, 245, 709
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	327, 396
BtgI	CCRYGG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	2 cut(s)	683, 692
Cac8I	GCNNGC	4 cut(s)	320, 536, 716, 720
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	334, 395, 574
Csp6I	GTAC	2 cut(s)	272, 557
CviQI	GTAC	2 cut(s)	272, 557
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	3 cut(s)	175, 291, 492
DpnII	GATC	3 cut(s)	173, 289, 490
Eco130I	CCWWGG	3 cut(s)	19, 102, 506
Eco47I	GGWCC	2 cut(s)	334, 574
Eco57I	CTGAAG	1 cut(s)	666
EcoRII	CCWGG	3 cut(s)	132, 228, 322
EcoT14I	CCWWGG	3 cut(s)	19, 102, 506
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	3 cut(s)	19, 102, 506
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	3 cut(s)	95, 320, 430
FbaI	TGATCA	2 cut(s)	289, 490
Fnu4HI	GCNGC	3 cut(s)	25, 234, 723
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	25, 234, 723
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	25, 234, 723
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	327, 396
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	4 cut(s)	62, 83, 514, 606
Hpy188I	TCNGA	5 cut(s)	61, 67, 88, 264, 289
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	81, 123, 792
HpyCH4III	ACNGT	2 cut(s)	130, 245
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	8 cut(s)	55, 77, 441, 524, 567, 681, 697, 714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 24, 324, 479
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	1 cut(s)	611
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	289, 490
Kzo9I	GATC	3 cut(s)	173, 289, 490
Lsp1109I	GCAGC	3 cut(s)	11, 245, 709
LweI	GCATC	2 cut(s)	450, 576
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	298, 620
MalI	GATC	3 cut(s)	175, 291, 492
MboI	GATC	3 cut(s)	173, 289, 490
MboII	GAAGA	5 cut(s)	47, 108, 523, 615, 757
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	802
MlyI	GAGTC	3 cut(s)	71, 77, 508
MmeI	TCCRAC	2 cut(s)	39, 276
MnlI	CCTC	5 cut(s)	21, 200, 463, 587, 755
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	375
MspR9I	CCNGG	3 cut(s)	134, 230, 324
MvaI	CCWGG	3 cut(s)	134, 230, 324
MwoI	GCNNNNNNNGC	4 cut(s)	15, 24, 324, 479
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	173, 289, 490
NlaIV	GGNNCC	5 cut(s)	49, 100, 196, 250, 336
NmeAIII	GCCGAG	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	3 cut(s)	9, 538, 722
PaeI	GCATGC	2 cut(s)	538, 722
PfeI	GAWTC	1 cut(s)	606
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	2 cut(s)	413, 507
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	26, 235, 724
PleI	GAGTC	3 cut(s)	70, 77, 508
PpsI	GAGTC	3 cut(s)	70, 77, 508
Psp6I	CCWGG	3 cut(s)	132, 228, 322
PspGI	CCWGG	3 cut(s)	132, 228, 322
PspN4I	GGNNCC	5 cut(s)	49, 100, 196, 250, 336
PspPI	GGNCC	3 cut(s)	334, 395, 574
PstI	CTGCAG	2 cut(s)	699, 716
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	273, 558
RsaNI	GTAC	2 cut(s)	272, 557
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	25, 234, 723
Sau3AI	GATC	3 cut(s)	173, 289, 490
Sau96I	GGNCC	3 cut(s)	334, 395, 574
SchI	GAGTC	3 cut(s)	71, 77, 508
ScrFI	CCNGG	3 cut(s)	134, 230, 324
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	7 cut(s)	381, 498, 579, 614, 646, 664, 689
SfaNI	GCATC	2 cut(s)	450, 576
SfcI	CTRYAG	2 cut(s)	695, 712
SinI	GGWCC	2 cut(s)	334, 574
SphI	GCATGC	2 cut(s)	538, 722
Sse9I	AATT	1 cut(s)	802
StyD4I	CCNGG	3 cut(s)	132, 228, 322
StyI	CCWWGG	3 cut(s)	19, 102, 506
TaaI	ACNGT	2 cut(s)	130, 245
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	802
TatI	WGTACW	2 cut(s)	271, 556
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	683, 699
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	24, 233, 722
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	173, 420, 608, 693
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	683, 699
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	2 cut(s)	413, 507
VpaK11BI	GGWCC	2 cut(s)	334, 574
XceI	RCATGY	3 cut(s)	9, 538, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.