Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

34080443 .. 34082112

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG278600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGAATTGTTCCGCACCGTCCACTTTGCAATCTTGACCTTATATGCTGCATGGCAATTTAGGAAAGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGGAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGTTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGAACAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTCCCTTATGTTTCAAGTTCCAATAGTGGGTCGCCTCCACGTTACCTTGTTGCGAATGCTGGCACTGACCAGCCACATCATGGGACAAGGGTAGTCATCAAAAACCAATACTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.45

Weight (kDa)

5.7

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	1 cut(s)	662
AciI	CCGC	2 cut(s)	64, 474
AcyI	GRCGYC	1 cut(s)	488
AfiI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
AgsI	TTSAA	1 cut(s)	597
AjnI	CCWGG	3 cut(s)	51, 483, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	98, 192
AspLEI	GCGC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	29, 200, 547
BanI	GGYRCC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	85, 204
BccI	CCATC	2 cut(s)	119, 530
BciT130I	CCWGG	3 cut(s)	53, 485, 573
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	137, 513
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	99, 193, 475
BlsI	GCNGC	3 cut(s)	100, 194, 476
Bme1390I	CCNGG	4 cut(s)	53, 389, 485, 573
BmiI	GGNNCC	2 cut(s)	451, 489
BmrFI	CCNGG	4 cut(s)	53, 389, 485, 573
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 609, 662
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	53, 485, 573
BseDI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
BseGI	GGATG	2 cut(s)	37, 235
BseLI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	85, 204
BshFI	GGCC	1 cut(s)	576
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	389, 491
BslFI	GGGAC	4 cut(s)	206, 371, 569, 679
BslI	CCNNNNNNNGG	3 cut(s)	490, 609, 662
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	4 cut(s)	206, 371, 569, 679
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	576
Bsp143I	GATC	1 cut(s)	544
Bsp19I	CCATGG	2 cut(s)	42, 357
BspACI	CCGC	2 cut(s)	64, 474
BspANI	GGCC	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	451, 489
BspMI	ACCTGC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	5 cut(s)	42, 51, 256, 357, 445
BssMI	GATC	1 cut(s)	544
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	4 cut(s)	42, 256, 357, 445
Bst2UI	CCWGG	3 cut(s)	53, 485, 573
Bst4CI	ACNGT	4 cut(s)	70, 143, 206, 385
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	492, 569, 643
BstDSI	CCRYGG	2 cut(s)	42, 357
BstF5I	GGATG	2 cut(s)	37, 235
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 573
BstNI	CCWGG	3 cut(s)	53, 485, 573
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	4 cut(s)	51, 387, 483, 571
BstV1I	GCAGC	2 cut(s)	85, 204
BsuRI	GGCC	1 cut(s)	576
BtgI	CCRYGG	2 cut(s)	42, 357
BtsCI	GGATG	2 cut(s)	37, 235
BtsIMutI	CAGTG	3 cut(s)	218, 339, 645
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	492, 569, 643
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	490
CviJI	RGCY	7 cut(s)	261, 291, 325, 444, 540, 576, 655
CviKI_1	RGCY	7 cut(s)	261, 291, 325, 444, 540, 576, 655
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
DraI	TTTAAA	1 cut(s)	132
Eco130I	CCWWGG	4 cut(s)	42, 256, 357, 445
EcoRII	CCWGG	3 cut(s)	51, 483, 571
EcoT14I	CCWWGG	4 cut(s)	42, 256, 357, 445
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	4 cut(s)	42, 256, 357, 445
FaqI	GGGAC	4 cut(s)	206, 371, 569, 679
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	99, 193, 475
FokI	GGATG	2 cut(s)	24, 242
Fsp4HI	GCNGC	3 cut(s)	99, 193, 475
FspBI	CTAG	2 cut(s)	137, 513
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	99, 193, 475
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	2 cut(s)	389, 491
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	317, 503
HpaII	CCGG	2 cut(s)	389, 491
HphI	GGTGA	3 cut(s)	29, 200, 547
Hpy166II	GTNNAC	2 cut(s)	73, 400
Hpy188I	TCNGA	3 cut(s)	316, 322, 544
Hpy188III	TCNNGA	3 cut(s)	85, 137, 146
Hpy8I	GTNNAC	2 cut(s)	73, 400
HpyAV	CCTTC	2 cut(s)	336, 381
HpyCH4III	ACNGT	4 cut(s)	70, 143, 206, 385
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	5 cut(s)	80, 101, 298, 332, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 573
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	488
HspAI	GCGC	1 cut(s)	488
KasI	GGCGCC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	1 cut(s)	544
Lsp1109I	GCAGC	2 cut(s)	85, 204
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	137, 513
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	4 cut(s)	206, 335, 553, 623
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MluCI	AATT	3 cut(s)	56, 107, 697
Mly113I	GGCGCC	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	294, 404, 531
MnlI	CCTC	5 cut(s)	166, 258, 312, 378, 627
MroNI	GCCGGC	1 cut(s)	490
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	2 cut(s)	213, 282
MspI	CCGG	2 cut(s)	389, 491
MspR9I	CCNGG	4 cut(s)	53, 389, 485, 573
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	3 cut(s)	53, 485, 573
MwoI	GCNNNNNNNGC	2 cut(s)	471, 573
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	2 cut(s)	42, 357
NdeII	GATC	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	490
NlaIV	GGNNCC	2 cut(s)	451, 489
NmuCI	GTSAC	3 cut(s)	206, 335, 553
NspI	RCATGY	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	213
PctI	GAATGC	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	100, 194, 476
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	51, 483, 571
PspGI	CCWGG	3 cut(s)	51, 483, 571
PspN4I	GGNNCC	2 cut(s)	451, 489
RseI	CAYNNNNRTG	2 cut(s)	213, 282
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	3 cut(s)	99, 193, 475
Sau3AI	GATC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	4 cut(s)	53, 389, 485, 573
SetI	ASST	5 cut(s)	92, 200, 293, 625, 630
SfaNI	GCATC	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	2 cut(s)	213, 282
Sse9I	AATT	3 cut(s)	56, 107, 697
SsiI	CCGC	2 cut(s)	64, 474
SspDI	GGCGCC	1 cut(s)	487
SspMI	CTAG	2 cut(s)	137, 513
StyD4I	CCNGG	4 cut(s)	51, 387, 483, 571
StyI	CCWWGG	4 cut(s)	42, 256, 357, 445
TaaI	ACNGT	4 cut(s)	70, 143, 206, 385
TaiI	ACGT	1 cut(s)	625
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	3 cut(s)	56, 107, 697
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	3 cut(s)	218, 346, 652
TseFI	GTSAC	3 cut(s)	206, 335, 553
TseI	GCWGC	2 cut(s)	98, 192
Tsp45I	GTSAC	3 cut(s)	206, 335, 553
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	218, 346, 652
Van91I	CCANNNNNTGG	1 cut(s)	662
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XspI	CTAG	2 cut(s)	137, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.