Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

58478128 .. 58480380

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATAGCGGCTTGAGTGAGAGTTTGATCGGAGTGGCACCACCACCACCACTATCGTCGGAGACGGCAAGCCAGCGATGGAGGAGATTGTGTAGCCTCCTCAAGAACCCCAAGCCAAGCAAGGAGGAGAAGTTCGGACTCCGTGTTGCAGTGCTGAGTATATATGCAAAATACCAATTTATCAACGGAATAGACAATCTAGATCTAGATAGTCAGGACGAGGAACAGACAGAGACAACAGAGGAAGCAAATGTTCCTAGCAGGTATTACTGTTATCAGTGTCGTCAAGTGGTCAGTGTCACTGTGGATGTCCAAATGACATGCCCTCTCTGCCATGGCGGCTGGATACAAGAATGTAGTACCGTTGGCCTACTCTATCTTACTATGCCATCAGAATCTGAGCATTCTGCAAGTGATTATGATGGACAGGGCACCATTCTGATCCATCCTTCCAGTCCAACTGTCATAGACATTGTCGAGGACAGCTATGGTTCAGATCCCAACCCCGACAGGTCCCCTTTTCTTAGCACTGGTTTGTATGATTACAACAACTATGACGAGTCACACCAGGCAACGGGCAATTATGATTCTAGTTTGGAACAGGGATTACTTACGCTTAGCATTGATGCAAATATTGTTGCTAACCAGCCTCATCATGGGACAAGGGTTACTACATCAGTCTGGATCTTTTCAGCCACTGGTTTCGCCTTTGAGGCTGCATCGGCATTTTTCGATCAGGTTTCCACCCCACGGAAGCCTCAATACTCATTGTATGGCATGCTGTTGTCCATCGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCACAATGCCCTGATACAAAGGCAAAGAGGACTCACATCTGCGAGTAACATTCTTTGGGGTATCTTGCCCGAAATTTTTGGTTTAGCTCTCGCATGTATACAATGCATTAGCTCGGCACTGCAGTTTTTATTTCTCTATAGGCATGCTGCTAATCCTATGAAAATATCGCTTGTGCCTTTCTTATTTTTCTTCGTTTTGTTTGCTTTCAAATATAGAGAAGGAAGGAATAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

FNIP LRR_8 NB-ARC

Protein Analysis

353

Amino Acids

39.21

Weight (kDa)

5.0

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	87 - 118	6.4e-06	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	2 cut(s)	37, 431
AccI	GTMKAC	1 cut(s)	922
AciI	CCGC	2 cut(s)	9, 339
AclWI	GGATC	3 cut(s)	436, 491, 692
AcsI	RAATTY	1 cut(s)	897
AfaI	GTAC	2 cut(s)	361, 801
AfiI	CCNNNNNNNGG	3 cut(s)	574, 656, 750
AgsI	TTSAA	1 cut(s)	1033
AjnI	CCWGG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	486, 911, 936
AluI	AGCT	3 cut(s)	486, 911, 936
Alw26I	GTCTC	2 cut(s)	56, 227
AlwI	GGATC	3 cut(s)	436, 491, 692
AlwNI	CAGNNNCTG	2 cut(s)	398, 698
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	716, 971
ApoI	RAATTY	1 cut(s)	897
AspS9I	GGNCC	2 cut(s)	513, 817
AvaII	GGWCC	2 cut(s)	513, 817
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	2 cut(s)	37, 431
BarI	GAAGNNNNNNTAC	2 cut(s)	746, 778
BbvI	GCAGC	2 cut(s)	703, 958
BccI	CCATC	5 cut(s)	72, 397, 416, 453, 797
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	56, 227
BfaI	CTAG	4 cut(s)	200, 206, 258, 591
BfmI	CTRYAG	2 cut(s)	944, 961
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	339
BglI	GCCNNNNNGGC	2 cut(s)	339, 713
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	4 cut(s)	10, 340, 717, 972
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	4 cut(s)	11, 341, 718, 973
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	2 cut(s)	513, 817
BmgT120I	GGNCC	2 cut(s)	513, 817
BmiI	GGNNCC	3 cut(s)	39, 433, 515
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	3 cut(s)	616, 728, 819
Bpu1102I	GCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	2 cut(s)	34, 86
BsaJI	CCNNGG	2 cut(s)	334, 749
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 656, 750
Bse1I	ACTGG	3 cut(s)	453, 535, 703
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	334, 749
BseGI	GGATG	2 cut(s)	313, 445
BseLI	CCNNNNNNNGG	3 cut(s)	574, 656, 750
BseMII	CTCAG	2 cut(s)	146, 390
BseNI	ACTGG	3 cut(s)	453, 535, 703
BseRI	GAGGAG	3 cut(s)	89, 97, 140
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	703, 958
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	2 cut(s)	37, 431
BslFI	GGGAC	2 cut(s)	499, 673
BslI	CCNNNNNNNGG	3 cut(s)	574, 656, 750
BsmAI	GTCTC	2 cut(s)	56, 227
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	499, 673
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
Bsp1720I	GCTNAGC	1 cut(s)	617
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	2 cut(s)	9, 339
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	147, 391
BspLI	GGNNCC	3 cut(s)	39, 433, 515
BspMAI	CTGCAG	1 cut(s)	948
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	436, 491, 692
BspT107I	GGYRCC	2 cut(s)	37, 431
BsrI	ACTGG	3 cut(s)	453, 535, 703
BssECI	CCNNGG	2 cut(s)	334, 749
BssMI	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
BssNAI	GTATAC	1 cut(s)	923
BssT1I	CCWWGG	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	4 cut(s)	272, 304, 364, 463
BstC8I	GCNNGC	4 cut(s)	70, 74, 779, 969
BstDEI	CTNAG	4 cut(s)	155, 399, 524, 617
BstDSI	CCRYGG	2 cut(s)	334, 749
BstF5I	GGATG	2 cut(s)	313, 445
BstKTI	GATC	6 cut(s)	30, 205, 444, 499, 687, 736
BstMAI	GTCTC	2 cut(s)	56, 227
BstMBI	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 339, 713, 722
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	4 cut(s)	324, 781, 921, 971
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	2 cut(s)	944, 961
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	703, 958
BstX2I	RGATCY	3 cut(s)	202, 496, 684
BstYI	RGATCY	3 cut(s)	202, 496, 684
BstZ17I	GTATAC	1 cut(s)	923
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	2 cut(s)	334, 749
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	313, 445
BtsI	GCAGTG	2 cut(s)	156, 941
BtsIMutI	CAGTG	7 cut(s)	156, 284, 300, 301, 528, 696, 941
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	70, 74, 779, 969
CaiI	CAGNNNCTG	2 cut(s)	398, 698
Cfr13I	GGNCC	2 cut(s)	513, 817
Csp6I	GTAC	2 cut(s)	360, 800
CviAII	CATG	6 cut(s)	321, 335, 656, 778, 918, 968
CviQI	GTAC	2 cut(s)	360, 800
DdeI	CTNAG	4 cut(s)	155, 399, 524, 617
DpnI	GATC	6 cut(s)	29, 204, 443, 498, 686, 735
DpnII	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	513, 817
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	6 cut(s)	324, 338, 659, 781, 921, 971
FaqI	GGGAC	2 cut(s)	499, 673
FatI	CATG	6 cut(s)	320, 334, 655, 777, 917, 967
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	4 cut(s)	10, 340, 717, 972
FokI	GGATG	2 cut(s)	320, 432
Fsp4HI	GCNGC	4 cut(s)	10, 340, 717, 972
FspBI	CTAG	4 cut(s)	200, 206, 258, 591
GluI	GCNGC	4 cut(s)	10, 340, 717, 972
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	324, 338, 659, 781, 921, 971
HinfI	GANTC	5 cut(s)	138, 395, 560, 587, 855
Hpy166II	GTNNAC	1 cut(s)	923
Hpy188I	TCNGA	7 cut(s)	32, 61, 137, 394, 400, 441, 496
Hpy188III	TCNNGA	5 cut(s)	103, 200, 206, 215, 682
Hpy8I	GTNNAC	1 cut(s)	923
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	459, 1037, 1041
HpyCH4III	ACNGT	4 cut(s)	272, 304, 364, 463
HpyCH4V	TGCA	8 cut(s)	149, 167, 410, 629, 719, 810, 930, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 339, 713, 722
HpyF3I	CTNAG	4 cut(s)	155, 399, 524, 617
Hsp92II	CATG	6 cut(s)	324, 338, 659, 781, 921, 971
Kzo9I	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
Lsp1109I	GCAGC	2 cut(s)	703, 958
LweI	GCATC	3 cut(s)	616, 728, 819
MaeI	CTAG	4 cut(s)	200, 206, 258, 591
MaeIII	GTNAC	4 cut(s)	298, 561, 667, 869
MalI	GATC	6 cut(s)	29, 204, 443, 498, 686, 735
MboI	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
MboII	GAAGA	1 cut(s)	1006
MflI	RGATCY	3 cut(s)	202, 496, 684
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	3 cut(s)	176, 580, 897
MlyI	GAGTC	3 cut(s)	132, 569, 849
MmeI	TCCRAC	2 cut(s)	39, 482
Mph1103I	ATGCAT	1 cut(s)	932
MspR9I	CCNGG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	4 cut(s)	330, 339, 713, 722
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
NlaIII	CATG	6 cut(s)	324, 338, 659, 781, 921, 971
NlaIV	GGNNCC	3 cut(s)	39, 433, 515
NmeAIII	GCCGAG	1 cut(s)	917
NmuCI	GTSAC	2 cut(s)	298, 561
NsiI	ATGCAT	1 cut(s)	932
NspI	RCATGY	4 cut(s)	324, 781, 921, 971
PaeI	GCATGC	2 cut(s)	781, 971
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	395, 587
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	11, 341, 718, 973
PleI	GAGTC	3 cut(s)	132, 568, 849
PpsI	GAGTC	3 cut(s)	132, 568, 849
PpuMI	RGGWCCY	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	39, 433, 515
PspPI	GGNCC	2 cut(s)	513, 817
PspPPI	RGGWCCY	1 cut(s)	513
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PstI	CTGCAG	1 cut(s)	948
PstNI	CAGNNNCTG	2 cut(s)	398, 698
PsuI	RGATCY	3 cut(s)	202, 496, 684
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	2 cut(s)	361, 801
RsaNI	GTAC	2 cut(s)	360, 800
SatI	GCNGC	4 cut(s)	10, 340, 717, 972
Sau3AI	GATC	6 cut(s)	27, 202, 441, 496, 684, 733
Sau96I	GGNCC	2 cut(s)	513, 817
SchI	GAGTC	3 cut(s)	132, 569, 849
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	8 cut(s)	266, 488, 515, 741, 822, 913, 938, 1060
SfaNI	GCATC	3 cut(s)	616, 728, 819
SfcI	CTRYAG	2 cut(s)	944, 961
SinI	GGWCC	2 cut(s)	513, 817
SmlI	CTYRAG	2 cut(s)	13, 101
SmoI	CTYRAG	2 cut(s)	13, 101
SphI	GCATGC	2 cut(s)	781, 971
Sse9I	AATT	3 cut(s)	176, 580, 897
SsiI	CCGC	2 cut(s)	9, 339
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	4 cut(s)	200, 206, 258, 591
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	4 cut(s)	272, 304, 364, 463
TaqI	TCGA	2 cut(s)	477, 732
TasI	AATT	3 cut(s)	176, 580, 897
TatI	WGTACW	1 cut(s)	799
TauI	GCSGC	2 cut(s)	12, 342
TfiI	GAWTC	2 cut(s)	395, 587
TscAI	CASTG	7 cut(s)	156, 284, 301, 307, 535, 703, 948
TseFI	GTSAC	2 cut(s)	298, 561
TseI	GCWGC	2 cut(s)	716, 971
Tsp45I	GTSAC	2 cut(s)	298, 561
TspDTI	ATGAA	1 cut(s)	998
TspGWI	ACGGA	3 cut(s)	131, 201, 766
TspRI	CASTG	7 cut(s)	156, 284, 301, 307, 535, 703, 948
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	513, 817
XapI	RAATTY	1 cut(s)	897
XbaI	TCTAGA	2 cut(s)	199, 205
XceI	RCATGY	4 cut(s)	324, 781, 921, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	922
XspI	CTAG	4 cut(s)	200, 206, 258, 591
Zsp2I	ATGCAT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.