Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Reverse (-)

33726752 .. 33730101

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGTATTGTTCCACAGCGTCCGCTCTGCAATCTTGACCTTTTATGCTGCACGGCAATTTACGAATGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGACAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCACCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTTTATGGGAAAACATGGTTGTGTCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGTTCAGCACTAAACAGATTCCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTCCAACCCTAGTCGGTCATTTTTACGTAGAGATGGCTCTGATCATGCTGTTACCAGCAATAGCATGCCAGGCCATGCGGTCCCTTATGTTTCAAGTTCCAATAGTGGGTTGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCGACCACATCATGGGTCAAGGATTACTTCATCCGTCTGGATCTTTTCAGCCACTGGTTTCGGCTTTGAGGCTGTTTCGGCATTTTTTGATCAGGTTTCCACCCCACGGAAGACTCGTTATGCATTATATGGCATGCTTTTGTCTATTGTGGCTGTACTTGTTTGCATCTTGGACCTCACTCTCAATGCCATGAAACAAAGAAGAATCACGTCTGAGAGTAACAGACTTTGGGGTATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTGCATCAGCTCGGCAGTGCAGTATTCATTTCTCTGCAGGCATCATGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCTTGTATGCTTTCAAATATAGGAATGGAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

38.6

Weight (kDa)

6.59

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 474, 581
AclWI	GGATC	1 cut(s)	698
AcuI	CTGAAG	1 cut(s)	915
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	4 cut(s)	490, 609, 662, 756
AgsI	TTSAA	3 cut(s)	597, 985, 1033
AjiI	CACGTC	1 cut(s)	861
AjnI	CCWGG	3 cut(s)	51, 483, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	291, 911, 936
AluI	AGCT	3 cut(s)	291, 911, 936
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	698
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	574, 643
ApeKI	GCWGC	2 cut(s)	98, 192
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	583, 644, 823
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	29, 200
AvaII	GGWCC	2 cut(s)	583, 823
BanI	GGYRCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	85, 204
BccI	CCATC	2 cut(s)	119, 530
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	53, 485, 573
BciVI	GTATCC	1 cut(s)	1000
BclI	TGATCA	2 cut(s)	544, 739
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	137, 513
BfmI	CTRYAG	1 cut(s)	961
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	1000
BisI	GCNGC	3 cut(s)	99, 193, 475
BlsI	GCNGC	3 cut(s)	100, 194, 476
Bme1390I	CCNGG	4 cut(s)	53, 389, 485, 573
Bme18I	GGWCC	2 cut(s)	583, 823
BmgBI	CACGTC	1 cut(s)	861
BmgT120I	GGNCC	3 cut(s)	583, 644, 823
BmiI	GGNNCC	3 cut(s)	451, 489, 585
BmrFI	CCNGG	4 cut(s)	53, 389, 485, 573
BmsI	GCATC	4 cut(s)	46, 825, 939, 976
BpiI	GAAGAC	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	6 cut(s)	42, 51, 256, 357, 445, 755
Bsc4I	CCNNNNNNNGG	4 cut(s)	490, 609, 662, 756
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	211, 709
BseBI	CCWGG	3 cut(s)	53, 485, 573
BseDI	CCNNGG	6 cut(s)	42, 51, 256, 357, 445, 755
BseGI	GGATG	3 cut(s)	37, 235, 680
BseLI	CCNNNNNNNGG	4 cut(s)	490, 609, 662, 756
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	2 cut(s)	211, 709
BseXI	GCAGC	2 cut(s)	85, 204
BsgI	GTGCAG	2 cut(s)	84, 965
BshFI	GGCC	2 cut(s)	576, 645
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	389, 491
BslFI	GGGAC	3 cut(s)	206, 371, 569
BslI	CCNNNNNNNGG	4 cut(s)	490, 609, 662, 756
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	206, 371, 569
BsnI	GGCC	2 cut(s)	576, 645
Bsp143I	GATC	3 cut(s)	544, 690, 739
Bsp19I	CCATGG	2 cut(s)	42, 357
BspACI	CCGC	3 cut(s)	73, 474, 581
BspANI	GGCC	2 cut(s)	576, 645
BspCNI	CTCAG	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	451, 489, 585
BspMAI	CTGCAG	1 cut(s)	965
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	211, 709
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	6 cut(s)	42, 51, 256, 357, 445, 755
BssMI	GATC	3 cut(s)	544, 690, 739
BssNI	GRCGYC	1 cut(s)	488
BssSI	CACGAG	1 cut(s)	995
BssT1I	CCWWGG	4 cut(s)	42, 256, 357, 445
Bst2BI	CACGAG	1 cut(s)	995
Bst2UI	CCWGG	3 cut(s)	53, 485, 573
Bst4CI	ACNGT	3 cut(s)	143, 206, 385
BstACI	GRCGYC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	4 cut(s)	492, 569, 785, 965
BstDEI	CTNAG	1 cut(s)	864
BstDSI	CCRYGG	3 cut(s)	42, 357, 755
BstF5I	GGATG	3 cut(s)	37, 235, 680
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	547, 693, 742
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	544, 690, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
BstNI	CCWGG	3 cut(s)	53, 485, 573
BstNSI	RCATGY	3 cut(s)	310, 571, 787
BstSCI	CCNGG	4 cut(s)	51, 387, 483, 571
BstSFI	CTRYAG	1 cut(s)	961
BstSNI	TACGTA	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	85, 204
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	1000
BsuRI	GGCC	2 cut(s)	576, 645
BtgI	CCRYGG	3 cut(s)	42, 357, 755
BtrI	CACGTC	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	37, 235, 680
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	5 cut(s)	218, 339, 702, 932, 948
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	4 cut(s)	492, 569, 785, 965
CaiI	CAGNNNCTG	1 cut(s)	704
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	583, 644, 823
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	806
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	1 cut(s)	864
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	3 cut(s)	546, 692, 741
DpnII	GATC	3 cut(s)	544, 690, 739
DraI	TTTAAA	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	530
Eco130I	CCWWGG	4 cut(s)	42, 256, 357, 445
Eco47I	GGWCC	2 cut(s)	583, 823
Eco57I	CTGAAG	1 cut(s)	915
EcoRII	CCWGG	3 cut(s)	51, 483, 571
EcoT14I	CCWWGG	4 cut(s)	42, 256, 357, 445
EcoT22I	ATGCAT	1 cut(s)	775
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	4 cut(s)	42, 256, 357, 445
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	3 cut(s)	206, 371, 569
FbaI	TGATCA	2 cut(s)	544, 739
Fnu4HI	GCNGC	3 cut(s)	99, 193, 475
FokI	GGATG	3 cut(s)	24, 242, 667
Fsp4HI	GCNGC	3 cut(s)	99, 193, 475
FspBI	CTAG	2 cut(s)	137, 513
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	99, 193, 475
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	576, 645
HapII	CCGG	2 cut(s)	389, 491
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	5 cut(s)	317, 429, 503, 763, 855
HpaII	CCGG	2 cut(s)	389, 491
HphI	GGTGA	2 cut(s)	29, 200
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	4 cut(s)	316, 322, 544, 865
Hpy188III	TCNNGA	4 cut(s)	85, 137, 146, 688
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	336, 381, 1041
HpyCH4III	ACNGT	3 cut(s)	143, 206, 385
HpyCH4IV	ACGT	2 cut(s)	529, 860
HpyCH4V	TGCA	9 cut(s)	80, 101, 298, 332, 773, 816, 930, 946, 963
HpyF10VI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	2 cut(s)	529, 860
Hsp92I	GRCGYC	1 cut(s)	488
HspAI	GCGC	1 cut(s)	488
KasI	GGCGCC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Ksp22I	TGATCA	2 cut(s)	544, 739
Kzo9I	GATC	3 cut(s)	544, 690, 739
Lsp1109I	GCAGC	2 cut(s)	85, 204
LweI	GCATC	4 cut(s)	46, 825, 939, 976
MaeI	CTAG	2 cut(s)	137, 513
MaeII	ACGT	2 cut(s)	529, 860
MaeIII	GTNAC	4 cut(s)	206, 335, 553, 869
MalI	GATC	3 cut(s)	546, 692, 741
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	3 cut(s)	544, 690, 739
MboII	GAAGA	3 cut(s)	772, 864, 1006
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	2 cut(s)	107, 1051
Mly113I	GGCGCC	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	326, 757
MmeI	TCCRAC	3 cut(s)	294, 404, 531
MnlI	CCTC	7 cut(s)	166, 258, 312, 378, 712, 836, 1004
Mph1103I	ATGCAT	1 cut(s)	775
MroNI	GCCGGC	1 cut(s)	490
MseI	TTAA	2 cut(s)	131, 624
MslI	CAYNNNNRTG	2 cut(s)	213, 282
MspI	CCGG	2 cut(s)	389, 491
MspR9I	CCNGG	4 cut(s)	53, 389, 485, 573
MvaI	CCWGG	3 cut(s)	53, 485, 573
MwoI	GCNNNNNNNGC	3 cut(s)	471, 573, 728
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	2 cut(s)	42, 357
NdeII	GATC	3 cut(s)	544, 690, 739
NgoMIV	GCCGGC	1 cut(s)	490
NlaIV	GGNNCC	3 cut(s)	451, 489, 585
NmeAIII	GCCGAG	1 cut(s)	917
NmuCI	GTSAC	2 cut(s)	206, 335
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	3 cut(s)	310, 571, 787
OliI	CACNNNNGTG	1 cut(s)	213
PaeI	GCATGC	2 cut(s)	571, 787
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PdiI	GCCGGC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	429, 503, 855
PflMI	CCANNNNNTGG	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	100, 194, 476
PleI	GAGTC	2 cut(s)	325, 757
PluTI	GGCGCC	1 cut(s)	491
PpsI	GAGTC	2 cut(s)	325, 757
Ppu21I	YACGTR	1 cut(s)	530
Psp6I	CCWGG	3 cut(s)	51, 483, 571
PspGI	CCWGG	3 cut(s)	51, 483, 571
PspN4I	GGNNCC	3 cut(s)	451, 489, 585
PspPI	GGNCC	3 cut(s)	583, 644, 823
PstI	CTGCAG	1 cut(s)	965
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	2 cut(s)	213, 282
SaqAI	TTAA	2 cut(s)	131, 624
SatI	GCNGC	3 cut(s)	99, 193, 475
Sau3AI	GATC	3 cut(s)	544, 690, 739
Sau96I	GGNCC	3 cut(s)	583, 644, 823
SchI	GAGTC	2 cut(s)	326, 757
ScrFI	CCNGG	4 cut(s)	53, 389, 485, 573
SfaNI	GCATC	4 cut(s)	46, 825, 939, 976
SfcI	CTRYAG	1 cut(s)	961
SfoI	GGCGCC	1 cut(s)	489
SinI	GGWCC	2 cut(s)	583, 823
SmiMI	CAYNNNNRTG	2 cut(s)	213, 282
SnaBI	TACGTA	1 cut(s)	530
SphI	GCATGC	2 cut(s)	571, 787
Sse9I	AATT	2 cut(s)	107, 1051
SsiI	CCGC	3 cut(s)	73, 474, 581
SspDI	GGCGCC	1 cut(s)	487
SspMI	CTAG	2 cut(s)	137, 513
StyD4I	CCNGG	4 cut(s)	51, 387, 483, 571
StyI	CCWWGG	4 cut(s)	42, 256, 357, 445
TaaI	ACNGT	3 cut(s)	143, 206, 385
TaiI	ACGT	2 cut(s)	532, 863
TaqII	GACCGA	2 cut(s)	507, 666
TasI	AATT	2 cut(s)	107, 1051
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	429, 503, 855
Tru1I	TTAA	2 cut(s)	131, 624
Tru9I	TTAA	2 cut(s)	131, 624
TscAI	CASTG	5 cut(s)	218, 346, 709, 932, 948
TseFI	GTSAC	2 cut(s)	206, 335
TseI	GCWGC	2 cut(s)	98, 192
Tsp45I	GTSAC	2 cut(s)	206, 335
TspDTI	ATGAA	4 cut(s)	366, 669, 857, 942
TspGWI	ACGGA	2 cut(s)	673, 772
TspRI	CASTG	5 cut(s)	218, 346, 709, 932, 948
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	583, 823
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	3 cut(s)	310, 571, 787
XspI	CTAG	2 cut(s)	137, 513
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.