Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

20789925 .. 20790591

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGAAGAGACCAATTTTCCCAATTTGGCCTCTCCCGTTAACATTCTGGTTGTTTTGGACTGCTTTTGACATTGGATCACCTGATAGTCCGTACAAAGTACCCTATGCTGTAATATTTAGGGAGACGGCAATAGTGGGTGTCGAGGGCTTCTCCAAGCTGCCCAAGCATTTCTTGGCTATGTGCTGTGGATGTGACCCTAAGAAAATATCACAATTTATTCCTATTTCAATGGCCATAGCAGTCCTTTTCTATATCAGAGCATACTTTGCCATCGACATATTTGTTGGGACAGTGCTATTGTTCATGTGGGAGCAGCTGAATAGGAAGGATGCAGAGGATTATGCAGGAGCAGTTGCTTCGGGTCTAATATGTGGTGATGGGATTTGGACAATTCCATCATCGATCCTCTATATTTTCAAGGTCAATCCACCCATCTGCCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

150

Amino Acids

16.84

Weight (kDa)

7.58

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	85, 400
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	2 cut(s)	95, 102
AgsI	TTSAA	2 cut(s)	231, 421
AluBI	AGCT	2 cut(s)	160, 319
AluI	AGCT	2 cut(s)	160, 319
Alw26I	GTCTC	2 cut(s)	4, 119
AlwI	GGATC	2 cut(s)	85, 400
AoxI	GGCC	2 cut(s)	29, 234
ApeKI	GCWGC	2 cut(s)	160, 316
AsuHPI	GGTGA	2 cut(s)	72, 389
BalI	TGGCCA	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	147, 328
BccI	CCATC	4 cut(s)	281, 374, 406, 443
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BcoDI	GTCTC	2 cut(s)	4, 119
BisI	GCNGC	2 cut(s)	161, 317
BlsI	GCNGC	2 cut(s)	162, 318
BmsI	GCATC	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bsa29I	ATCGAT	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	4
BseCI	ATCGAT	1 cut(s)	404
BseGI	GGATG	2 cut(s)	197, 337
BseXI	GCAGC	2 cut(s)	147, 328
BshFI	GGCC	2 cut(s)	31, 236
BshVI	ATCGAT	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	4, 119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	31, 236
Bso31I	GGTCTC	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	77, 405
BspANI	GGCC	2 cut(s)	31, 236
BspDI	ATCGAT	1 cut(s)	404
BspPI	GGATC	2 cut(s)	85, 400
BspTNI	GGTCTC	1 cut(s)	4
BssMI	GATC	2 cut(s)	77, 405
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	197, 337
BstKTI	GATC	2 cut(s)	80, 408
BstMAI	GTCTC	2 cut(s)	4, 119
BstMBI	GATC	2 cut(s)	77, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 269
BstV1I	GCAGC	2 cut(s)	147, 328
Bsu15I	ATCGAT	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	31, 236
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	197, 337
BtsIMutI	CAGTG	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	94, 101
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	6 cut(s)	31, 150, 160, 179, 236, 319
CviKI_1	RGCY	6 cut(s)	31, 150, 160, 179, 236, 319
CviQI	GTAC	2 cut(s)	94, 101
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	79, 407
DpnII	GATC	2 cut(s)	77, 405
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	310
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	161, 317
FokI	GGATG	2 cut(s)	204, 344
Fsp4HI	GCNGC	2 cut(s)	161, 317
GluI	GCNGC	2 cut(s)	161, 317
HaeIII	GGCC	2 cut(s)	31, 236
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HpaI	GTTAAC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	72, 389
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	335, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 269
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	310
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	77, 405
LmnI	GCTCC	2 cut(s)	313, 350
LpnPI	CCDG	3 cut(s)	34, 96, 333
Lsp1109I	GCAGC	2 cut(s)	147, 328
LweI	GCATC	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	79, 407
MboI	GATC	2 cut(s)	77, 405
MboII	GAAGA	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	4 cut(s)	15, 24, 215, 393
MluNI	TGGCCA	1 cut(s)	236
MnlI	CCTC	4 cut(s)	42, 139, 331, 419
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	166, 269
NdeII	GATC	2 cut(s)	77, 405
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	162, 318
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	95, 102
RsaNI	GTAC	2 cut(s)	94, 101
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	161, 317
Sau3AI	GATC	2 cut(s)	77, 405
SetI	ASST	4 cut(s)	85, 162, 321, 426
SfaNI	GCATC	1 cut(s)	322
Sse9I	AATT	4 cut(s)	15, 24, 215, 393
SspI	AATATT	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	144, 276, 404
TasI	AATT	4 cut(s)	15, 24, 215, 393
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	160, 316
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	20, 295
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.