Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

499088 .. 501096

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACAGCCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCGTACAGGCGAAATCTGCATTAGTATTAAAAAAATACCCAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCGTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTTTATACTCAGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACATCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCACAGCTTGCCGGGAAGCAAGTTCAATGTCTTGTAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGGACACGTTTTATTTAGACTTCAATCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTATTGTTTCGTTTGCAGCTGCCTAAAGGTACTTTTATCACTGCACTAGTTGTTATTGTTTTGGTTTTCGGAATACCATTACCAAAGGCACTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

9.05

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	94 - 270	2.8e-36	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	303
AciI	CCGC	2 cut(s)	278, 314
AcuI	CTGAAG	1 cut(s)	475
AfaI	GTAC	3 cut(s)	120, 633, 781
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflII	CTTAAG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	4 cut(s)	203, 434, 577, 730
AhlI	ACTAGT	1 cut(s)	796
AluBI	AGCT	6 cut(s)	163, 390, 415, 474, 707, 769
AluI	AGCT	6 cut(s)	163, 390, 415, 474, 707, 769
Alw21I	GWGCWC	2 cut(s)	165, 412
Alw26I	GTCTC	2 cut(s)	30, 228
Alw44I	GTGCAC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	249, 668
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	5 cut(s)	101, 104, 474, 766, 769
ArsI	GACNNNNNNTTYG	1 cut(s)	827
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	421
BaeGI	GKGCMC	2 cut(s)	412, 696
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	165, 412
BbvI	GCAGC	5 cut(s)	88, 116, 461, 756, 778
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	30, 228
BcuI	ACTAGT	1 cut(s)	796
BfaI	CTAG	2 cut(s)	531, 797
BfmI	CTRYAG	2 cut(s)	102, 207
BfrI	CTTAAG	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	5 cut(s)	102, 105, 475, 767, 770
BlsI	GCNGC	5 cut(s)	103, 106, 476, 768, 771
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	2 cut(s)	149, 351
BmuI	ACTGGG	2 cut(s)	149, 351
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpuMI	CCSGG	1 cut(s)	421
BsaJI	CCNNGG	3 cut(s)	79, 535, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	3 cut(s)	155, 357, 701
Bse3DI	GCAATG	1 cut(s)	727
BseDI	CCNNGG	3 cut(s)	79, 535, 712
BseGI	GGATG	1 cut(s)	599
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	3 cut(s)	24, 303, 642
BseNI	ACTGG	3 cut(s)	155, 357, 701
BseSI	GKGCMC	2 cut(s)	412, 696
BseXI	GCAGC	5 cut(s)	88, 116, 461, 756, 778
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	251, 670
BsiHKAI	GWGCWC	2 cut(s)	165, 412
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	30, 228
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	251, 670
Bsp1286I	GDGCHC	3 cut(s)	165, 412, 696
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	278, 314
BspANI	GGCC	2 cut(s)	251, 670
BspCNI	CTCAG	3 cut(s)	23, 302, 641
BspMAI	CTGCAG	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	155, 357, 701
BssECI	CCNNGG	3 cut(s)	79, 535, 712
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	79, 535, 712
Bst4CI	ACNGT	2 cut(s)	51, 843
BstAFI	CTTAAG	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	5 cut(s)	10, 261, 289, 452, 628
BstF5I	GGATG	1 cut(s)	599
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	30, 228
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 416
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	2 cut(s)	102, 207
BstSLI	GKGCMC	2 cut(s)	412, 696
BstV1I	GCAGC	5 cut(s)	88, 116, 461, 756, 778
BstXI	CCANNNNNNTGG	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	251, 670
BtsCI	GGATG	1 cut(s)	599
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	5 cut(s)	364, 499, 694, 789, 839
Cac8I	GCNNGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	119, 632, 780
CviAII	CATG	4 cut(s)	457, 510, 654, 686
CviQI	GTAC	3 cut(s)	119, 632, 780
DdeI	CTNAG	5 cut(s)	10, 261, 289, 452, 628
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DrdI	GACNNNNNNGTC	1 cut(s)	303
DseDI	GACNNNNNNGTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	79, 535, 712
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	475
EcoICRI	GAGCTC	1 cut(s)	163
EcoT14I	CCWWGG	3 cut(s)	79, 535, 712
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	3 cut(s)	79, 535, 712
FaeI	CATG	4 cut(s)	460, 513, 657, 689
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	456, 509, 653, 685
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	102, 105, 475, 767, 770
FokI	GGATG	1 cut(s)	606
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	5 cut(s)	102, 105, 475, 767, 770
FspBI	CTAG	2 cut(s)	531, 797
GluI	GCNGC	5 cut(s)	102, 105, 475, 767, 770
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	251, 670
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	4 cut(s)	460, 513, 657, 689
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	420
Hpy166II	GTNNAC	2 cut(s)	410, 622
Hpy188I	TCNGA	2 cut(s)	593, 821
Hpy8I	GTNNAC	2 cut(s)	410, 622
HpyCH4III	ACNGT	2 cut(s)	51, 843
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	5 cut(s)	104, 134, 410, 766, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 416
HpyF3I	CTNAG	5 cut(s)	10, 261, 289, 452, 628
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	4 cut(s)	460, 513, 657, 689
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	81, 471
LpnPI	CCDG	7 cut(s)	107, 168, 370, 433, 675, 682, 717
Lsp1109I	GCAGC	5 cut(s)	88, 116, 461, 756, 778
MaeI	CTAG	2 cut(s)	531, 797
MaeII	ACGT	1 cut(s)	560
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	1 cut(s)	481
MhlI	GDGCHC	3 cut(s)	165, 412, 696
MluCI	AATT	2 cut(s)	55, 465
MmeI	TCCRAC	2 cut(s)	274, 571
MnlI	CCTC	4 cut(s)	19, 62, 621, 681
MseI	TTAA	7 cut(s)	143, 239, 254, 266, 464, 480, 552
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	707, 769
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	131, 416
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	4 cut(s)	460, 513, 657, 689
NspI	RCATGY	1 cut(s)	689
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	103, 106, 476, 768, 771
Psp124BI	GAGCTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	689
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	106
PvuII	CAGCTG	2 cut(s)	707, 769
RsaI	GTAC	3 cut(s)	120, 633, 781
RsaNI	GTAC	3 cut(s)	119, 632, 780
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	7 cut(s)	143, 239, 254, 266, 464, 480, 552
SatI	GCNGC	5 cut(s)	102, 105, 475, 767, 770
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	633
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	3 cut(s)	165, 412, 696
SfcI	CTRYAG	2 cut(s)	102, 207
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SpeI	ACTAGT	1 cut(s)	796
Sse9I	AATT	2 cut(s)	55, 465
SsiI	CCGC	2 cut(s)	278, 314
SspMI	CTAG	2 cut(s)	531, 797
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	3 cut(s)	79, 535, 712
TaaI	ACNGT	2 cut(s)	51, 843
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	55, 465
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	7 cut(s)	143, 239, 254, 266, 464, 480, 552
Tru9I	TTAA	7 cut(s)	143, 239, 254, 266, 464, 480, 552
TscAI	CASTG	5 cut(s)	364, 499, 701, 796, 846
TseI	GCWGC	5 cut(s)	101, 104, 474, 766, 769
TspDTI	ATGAA	1 cut(s)	498
TspRI	CASTG	5 cut(s)	364, 499, 701, 796, 846
Vha464I	CTTAAG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	531, 797
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.