Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

20951561 .. 20954754

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATGAGAGAACATATAAACTCACCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGAATTGACACTTTTTAAGAACACTTTTATGGTGAAGTTTGGTTCCTTCATTTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

139

Amino Acids

15.7

Weight (kDa)

7.67

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	23 - 133	3.5e-20	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	126
AciI	CCGC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	75, 111, 213, 238, 297
AluI	AGCT	5 cut(s)	75, 111, 213, 238, 297
ApeKI	GCWGC	1 cut(s)	297
AseI	ATTAAT	1 cut(s)	66
AsuC2I	CCSGG	2 cut(s)	28, 244
AsuHPI	GGTGA	2 cut(s)	16, 403
BbvI	GCAGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	42
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	28, 244
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	28, 42, 244
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	3 cut(s)	28, 42, 244
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	28, 244
BsaJI	CCNNGG	3 cut(s)	27, 40, 115
Bse1I	ACTGG	2 cut(s)	94, 180
Bse3DI	GCAATG	2 cut(s)	204, 263
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	27, 40, 115
BseGI	GGATG	2 cut(s)	10, 90
BseMI	GCAATG	2 cut(s)	204, 263
BseNI	ACTGG	2 cut(s)	94, 180
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	27, 243
BslFI	GGGAC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	204, 263
BsrI	ACTGG	2 cut(s)	94, 180
BssECI	CCNNGG	3 cut(s)	27, 40, 115
BssMI	GATC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	10, 90
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	3 cut(s)	26, 40, 242
BstV1I	GCAGC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	10, 90
BtsIMutI	CAGTG	2 cut(s)	187, 322
Cac8I	GCNNGC	1 cut(s)	240
CviAII	CATG	2 cut(s)	280, 333
CviJI	RGCY	6 cut(s)	75, 111, 213, 238, 297, 357
CviKI_1	RGCY	6 cut(s)	75, 111, 213, 238, 297, 357
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DrdI	GACNNNNNNGTC	1 cut(s)	126
DseDI	GACNNNNNNGTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	283, 336
FaiI	YATR	8 cut(s)	16, 18, 152, 158, 175, 281, 334, 389
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	279, 332
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	2 cut(s)	17, 97
Fsp4HI	GCNGC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	298
HapII	CCGG	2 cut(s)	27, 243
Hin1II	CATG	2 cut(s)	283, 336
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	27, 243
HphI	GGTGA	2 cut(s)	16, 403
Hpy188I	TCNGA	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	233, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	283, 336
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	7 cut(s)	27, 34, 40, 54, 75, 193, 256
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	2 cut(s)	68, 304
MluCI	AATT	2 cut(s)	288, 362
MnlI	CCTC	2 cut(s)	25, 107
MseI	TTAA	4 cut(s)	66, 287, 303, 375
MslI	CAYNNNNRTG	2 cut(s)	197, 386
MspI	CCGG	2 cut(s)	27, 243
MspR9I	CCNGG	3 cut(s)	28, 42, 244
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	2 cut(s)	28, 244
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	283, 336
NlaIV	GGNNCC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	299
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	403
RseI	CAYNNNNRTG	2 cut(s)	197, 386
SaqAI	TTAA	4 cut(s)	66, 287, 303, 375
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	28, 42, 244
SetI	ASST	6 cut(s)	77, 113, 150, 215, 240, 299
SmiMI	CAYNNNNRTG	2 cut(s)	197, 386
Sse9I	AATT	2 cut(s)	288, 362
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	26, 40, 242
StyI	CCWWGG	1 cut(s)	115
TasI	AATT	2 cut(s)	288, 362
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	4 cut(s)	66, 287, 303, 375
Tru9I	TTAA	4 cut(s)	66, 287, 303, 375
TscAI	CASTG	2 cut(s)	187, 322
TseI	GCWGC	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	321, 397
TspRI	CASTG	2 cut(s)	187, 322
VspI	ATTAAT	1 cut(s)	66
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.