Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

38592814 .. 38593596

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGCTACCAACCCAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGTTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGCCAGGCAGTGTTGACCCGTATTTCTCCTCACCCTTCACTACTAGTTCTAGTACTACTTTCTTTGGCAGGAATGAAGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTTTGTTCCCAGTGCACGGTGAGGACGTCCTTGGAGACCCGAAGACTACTTCCGAGGGAGGTAGCGCATATGGCTACTATTCCAGTGGCTCGGGCGGTTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAATCCTTCCGGAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

260

Amino Acids

27.73

Weight (kDa)

4.68

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	2.5e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	645
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	761
AciI	CCGC	1 cut(s)	711
AclWI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	3 cut(s)	91, 328, 538
AfiI	CCNNNNNNNGG	3 cut(s)	329, 413, 632
AgsI	TTSAA	1 cut(s)	608
AhlI	ACTAGT	3 cut(s)	314, 443, 527
AjnI	CCWGG	4 cut(s)	92, 322, 487, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	5 cut(s)	7, 199, 410, 745, 767
AluI	AGCT	5 cut(s)	7, 199, 410, 745, 767
Alw21I	GWGCWC	3 cut(s)	177, 633, 747
Alw26I	GTCTC	2 cut(s)	197, 645
Alw44I	GTGCAC	1 cut(s)	629
AlwI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
Ama87I	CYCGRG	2 cut(s)	261, 706
Aor13HI	TCCGGA	1 cut(s)	761
AoxI	GGCC	2 cut(s)	404, 485
ApaLI	GTGCAC	1 cut(s)	629
ApeKI	GCWGC	3 cut(s)	50, 293, 767
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 416, 448
Asp700I	GAANNNNTTC	2 cut(s)	316, 612
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	404, 438, 485
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	507, 587, 647
AvaI	CYCGRG	2 cut(s)	261, 706
AvaII	GGWCC	1 cut(s)	438
BaeGI	GKGCMC	3 cut(s)	164, 306, 633
BamHI	GGATCC	4 cut(s)	335, 383, 416, 464
BanII	GRGCYC	2 cut(s)	262, 747
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	3 cut(s)	177, 633, 747
BbvI	GCAGC	3 cut(s)	62, 280, 754
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	4 cut(s)	94, 324, 489, 599
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	197, 645
BcuI	ACTAGT	3 cut(s)	314, 443, 527
BfaI	CTAG	4 cut(s)	315, 444, 528, 534
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 768
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	3 cut(s)	52, 295, 769
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	5 cut(s)	55, 94, 324, 489, 599
Bme18I	GGWCC	1 cut(s)	438
BmeT110I	CYCGRG	2 cut(s)	261, 706
BmgT120I	GGNCC	3 cut(s)	404, 438, 485
BmiI	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
BmrFI	CCNGG	5 cut(s)	55, 94, 324, 489, 599
BmrI	ACTGGG	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	665
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	3 cut(s)	113, 282, 761
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	4 cut(s)	306, 573, 646, 669
BsaWI	WCCGGW	1 cut(s)	761
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 413, 632
Bse1I	ACTGG	7 cut(s)	205, 334, 367, 376, 457, 626, 699
BseAI	TCCGGA	1 cut(s)	761
BseBI	CCWGG	4 cut(s)	94, 324, 489, 599
BseDI	CCNNGG	4 cut(s)	306, 573, 646, 669
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	329, 413, 632
BseMII	CTCAG	1 cut(s)	760
BseNI	ACTGG	7 cut(s)	205, 334, 367, 376, 457, 626, 699
BseRI	GAGGAG	2 cut(s)	502, 600
BseSI	GKGCMC	3 cut(s)	164, 306, 633
BseXI	GCAGC	3 cut(s)	62, 280, 754
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	406, 487
BsiHKAI	GWGCWC	3 cut(s)	177, 633, 747
BsiHKCI	CYCGRG	2 cut(s)	261, 706
BsiSI	CCGG	2 cut(s)	54, 762
BslI	CCNNNNNNNGG	3 cut(s)	329, 413, 632
BsmAI	GTCTC	2 cut(s)	197, 645
BsnI	GGCC	2 cut(s)	406, 487
Bso31I	GGTCTC	1 cut(s)	645
BsoBI	CYCGRG	2 cut(s)	261, 706
Bsp1286I	GDGCHC	6 cut(s)	164, 177, 262, 306, 633, 747
Bsp13I	TCCGGA	1 cut(s)	761
Bsp1720I	GCTNAGC	1 cut(s)	746
Bsp19I	CCATGG	2 cut(s)	306, 573
BspACI	CCGC	1 cut(s)	711
BspANI	GGCC	2 cut(s)	406, 487
BspCNI	CTCAG	1 cut(s)	759
BspEI	TCCGGA	1 cut(s)	761
BspLI	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
BspPI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
BspTNI	GGTCTC	1 cut(s)	645
BsrI	ACTGG	7 cut(s)	205, 334, 367, 376, 457, 626, 699
BssECI	CCNNGG	4 cut(s)	306, 573, 646, 669
BssNI	GRCGYC	1 cut(s)	642
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	3 cut(s)	306, 573, 646
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	4 cut(s)	94, 324, 489, 599
Bst4CI	ACNGT	2 cut(s)	635, 722
Bst6I	CTCTTC	2 cut(s)	272, 618
BstACI	GRCGYC	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	746, 780
BstDSI	CCRYGG	2 cut(s)	306, 573
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	683
BstMAI	GTCTC	2 cut(s)	197, 645
BstMWI	GCNNNNNNNGC	2 cut(s)	687, 776
BstNI	CCWGG	4 cut(s)	94, 324, 489, 599
BstSCI	CCNGG	5 cut(s)	53, 92, 322, 487, 597
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	164, 306, 633
BstV1I	GCAGC	3 cut(s)	62, 280, 754
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
BstYI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
BsuRI	GGCC	2 cut(s)	406, 487
BtgI	CCRYGG	2 cut(s)	306, 573
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	4 cut(s)	360, 499, 633, 706
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	404, 438, 485
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 327, 537
CviAII	CATG	2 cut(s)	307, 574
CviQI	GTAC	3 cut(s)	90, 327, 537
DdeI	CTNAG	2 cut(s)	746, 780
Eam1104I	CTCTTC	2 cut(s)	272, 618
EarI	CTCTTC	2 cut(s)	272, 618
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	3 cut(s)	306, 573, 646
Eco24I	GRGCYC	2 cut(s)	262, 747
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	745
Eco88I	CYCGRG	2 cut(s)	261, 706
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	4 cut(s)	92, 322, 487, 597
EcoT14I	CCWWGG	3 cut(s)	306, 573, 646
EcoT38I	GRGCYC	2 cut(s)	262, 747
ErhI	CCWWGG	3 cut(s)	306, 573, 646
FaeI	CATG	2 cut(s)	310, 577
FaiI	YATR	5 cut(s)	210, 308, 575, 685, 687
FatI	CATG	2 cut(s)	306, 573
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	3 cut(s)	51, 294, 768
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	262, 747
Fsp4HI	GCNGC	3 cut(s)	51, 294, 768
FspBI	CTAG	4 cut(s)	315, 444, 528, 534
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	3 cut(s)	51, 294, 768
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HaeIII	GGCC	2 cut(s)	406, 487
HapII	CCGG	2 cut(s)	54, 762
HhaI	GCGC	1 cut(s)	683
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	2 cut(s)	310, 577
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 762
HphI	GGTGA	3 cut(s)	507, 587, 647
Hpy166II	GTNNAC	3 cut(s)	441, 499, 631
Hpy188I	TCNGA	1 cut(s)	670
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 740, 762
Hpy8I	GTNNAC	3 cut(s)	441, 499, 631
HpyAV	CCTTC	2 cut(s)	529, 768
HpyCH4III	ACNGT	2 cut(s)	635, 722
HpyCH4IV	ACGT	3 cut(s)	252, 642, 732
HpyCH4V	TGCA	2 cut(s)	285, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	687, 776
HpyF3I	CTNAG	2 cut(s)	746, 780
HpySE526I	ACGT	3 cut(s)	252, 642, 732
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	2 cut(s)	310, 577
HspAI	GCGC	1 cut(s)	681
Kpn2I	TCCGGA	1 cut(s)	761
LmnI	GCTCC	2 cut(s)	4, 764
Lsp1109I	GCAGC	3 cut(s)	62, 280, 754
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	4 cut(s)	315, 444, 528, 534
MaeII	ACGT	3 cut(s)	252, 642, 732
MaeIII	GTNAC	1 cut(s)	713
MboII	GAAGA	5 cut(s)	289, 572, 602, 605, 670
MflI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
MhlI	GDGCHC	6 cut(s)	164, 177, 262, 306, 633, 747
MluCI	AATT	4 cut(s)	349, 397, 430, 478
MroI	TCCGGA	1 cut(s)	761
MroXI	GAANNNNTTC	2 cut(s)	316, 612
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	199, 410
MspI	CCGG	2 cut(s)	54, 762
MspR9I	CCNGG	5 cut(s)	55, 94, 324, 489, 599
MvaI	CCWGG	4 cut(s)	94, 324, 489, 599
MwoI	GCNNNNNNNGC	2 cut(s)	687, 776
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	2 cut(s)	306, 573
NdeI	CATATG	1 cut(s)	685
NlaIII	CATG	2 cut(s)	310, 577
NlaIV	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PdmI	GAANNNNTTC	2 cut(s)	316, 612
PfeI	GAWTC	2 cut(s)	100, 123
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	52, 295, 769
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	4 cut(s)	92, 322, 487, 597
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	4 cut(s)	92, 322, 487, 597
PspN4I	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
PspPI	GGNCC	3 cut(s)	404, 438, 485
PsuI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
PvuII	CAGCTG	2 cut(s)	199, 410
RsaI	GTAC	3 cut(s)	91, 328, 538
RsaNI	GTAC	3 cut(s)	90, 327, 537
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 768
Sau96I	GGNCC	3 cut(s)	404, 438, 485
ScaI	AGTACT	1 cut(s)	538
ScrFI	CCNGG	5 cut(s)	55, 94, 324, 489, 599
SduI	GDGCHC	6 cut(s)	164, 177, 262, 306, 633, 747
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 740
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 740
SpeI	ACTAGT	3 cut(s)	314, 443, 527
Sse9I	AATT	4 cut(s)	349, 397, 430, 478
SsiI	CCGC	1 cut(s)	711
SspMI	CTAG	4 cut(s)	315, 444, 528, 534
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	5 cut(s)	53, 92, 322, 487, 597
StyI	CCWWGG	3 cut(s)	306, 573, 646
TaaI	ACNGT	2 cut(s)	635, 722
TaiI	ACGT	3 cut(s)	255, 645, 735
TaqI	TCGA	3 cut(s)	27, 262, 390
TasI	AATT	4 cut(s)	349, 397, 430, 478
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	4 cut(s)	367, 499, 633, 706
TseI	GCWGC	3 cut(s)	50, 293, 767
TspDTI	ATGAA	2 cut(s)	290, 573
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	4 cut(s)	367, 499, 633, 706
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	438
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 612
XspI	CTAG	4 cut(s)	315, 444, 528, 534
ZraI	GACGTC	1 cut(s)	643
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.