Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

71111104 .. 71111585

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCCAGAGGACGACCGATCCTCTTCCGCCTCCTTGACGACTGTTTTGAGCCCCGAATGCCGAATCTGTCAGACGGAGGACTCCATCGACCACACGGAGGCTCCTTGCCGGTGCAATGGCACCCTAAAGTTTGCGCACAGAGATTGTATCCAGCGATGGGTCAATTCTCGTTTCAAGACTACTTGTGAGATCTGTAACCAGCAGTATGAGGGTGGTTATAGAGTAACGGTGCCACCACCTGCTAAGCCGCCGCAGCCTACGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

88

Amino Acids

9.89

Weight (kDa)

6.06

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	20 - 65	7.6e-14	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc16I	TGCGCA	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	119, 229
AciI	CCGC	3 cut(s)	27, 248, 251
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	97, 157
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AspLEI	GCGC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	119, 229
BanII	GRGCYC	1 cut(s)	53
BccI	CCATC	2 cut(s)	92, 150
BciVI	GTATCC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	3 cut(s)	248, 251, 254
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	249, 252, 255
BmiI	GGNNCC	3 cut(s)	102, 121, 231
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 157
Bse118I	RCCGGY	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	97, 157
BseMI	GCAATG	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	16
BshNI	GGYRCC	2 cut(s)	119, 229
BsiEI	CGRYCG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	97, 157
BsmI	GAATGC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	17, 189
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	3 cut(s)	27, 248, 251
BspLI	GGNNCC	3 cut(s)	102, 121, 231
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	119, 229
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	2 cut(s)	17, 189
Bst4CI	ACNGT	2 cut(s)	43, 229
Bst6I	CTCTTC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	20, 192
BstMBI	GATC	2 cut(s)	17, 189
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 253
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	108
CviJI	RGCY	5 cut(s)	51, 101, 247, 256, 264
CviKI_1	RGCY	5 cut(s)	51, 101, 247, 256, 264
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	19, 191
DpnII	GATC	2 cut(s)	17, 189
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	53
FaiI	YATR	2 cut(s)	207, 219
Fnu4HI	GCNGC	3 cut(s)	248, 251, 254
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	248, 251, 254
FspBI	CTAG	1 cut(s)	265
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	248, 251, 254
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	63, 80
HpaII	CCGG	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	43, 229
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 253
HpyF3I	CTNAG	1 cut(s)	243
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	17, 189
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	18, 122, 164, 212, 252
MaeI	CTAG	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	194, 223
MalI	GATC	2 cut(s)	19, 191
MboI	GATC	2 cut(s)	17, 189
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	31, 40, 70, 91, 202
MspI	CCGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	57, 253
NdeII	GATC	2 cut(s)	17, 189
NlaIV	GGNNCC	3 cut(s)	102, 121, 231
NsbI	TGCGCA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	249, 252, 255
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	102, 121, 231
PsuI	RGATCY	1 cut(s)	189
SatI	GCNGC	3 cut(s)	248, 251, 254
Sau3AI	GATC	2 cut(s)	17, 189
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	2 cut(s)	241, 266
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	3 cut(s)	27, 248, 251
SspMI	CTAG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	43, 229
TaqI	TCGA	1 cut(s)	87
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	163
TauI	GCSGC	2 cut(s)	250, 253
TfiI	GAWTC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	253
TspGWI	ACGGA	2 cut(s)	89, 110
XspI	CTAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.