Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

33623575 .. 33631067

Gene Structure 7493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCAAAAGAATTCAGCTTCATCTTCAGATGGTGCAGATGAGGAATTTTGTGATCTTGCCAATTCATCATCAGACGAAGACTTGATGAATCTTCAGATTGAAGCTCTACAAGAGAAGGGGAGAAGAAGACGCCGGGGCTCAATTCCTGGTCACAAGCTGAATCTGACGGTGGGGATCATCCCGTCCTTGAATGTGGTAGCCGGTCTGCTCGGGTTCTTCTTCGTCAAGTCCTGGATCGGGTTCTTGGCCCAATTTGGGTTTCAGGTGAAGCCCTTCACCAGGCAAGAGAACACTATCATCCAAACTTGCGTCGTCGCTTGCTATAGCCTCGCCTTTAGCTGTATAACCCTCAAATCATTAGCTCTTTTAATTTGTGTGGTTGCAATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGAATTGACACTTTTTAAGAACACTTTTATGTATGGATTCATTTGTGACCATATCAGGTTCCTCTATGCTACCTCTAACTGTTTTCTAAAGGAGGTTTTTGGATCGGGTCTAGGCTCGGATCAATATATGTTGCTTCTTGGGCCAAAAGGGTTTTCTGAAGGTGGCCAAAATGTGGCCTTATTGATTTGTCCTTGGAGAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

317

Amino Acids

35.23

Weight (kDa)

7.45

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	53 - 259	7.8e-36	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	513
AccB7I	CCANNNNNTGG	1 cut(s)	919
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	5 cut(s)	12, 185, 245, 856, 873
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	2 cut(s)	13, 47
AcuI	CTGAAG	4 cut(s)	12, 80, 685, 924
AcyI	GRCGYC	1 cut(s)	133
AfiI	CCNNNNNNNGG	4 cut(s)	240, 258, 282, 919
AgsI	TTSAA	3 cut(s)	104, 193, 749
AjnI	CCWGG	4 cut(s)	148, 233, 281, 427
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 883, 915
AlwI	GGATC	5 cut(s)	12, 185, 245, 856, 873
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	249, 887, 910, 921
ApeKI	GCWGC	1 cut(s)	684
ApoI	RAATTY	2 cut(s)	13, 47
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	250, 887
AsuC2I	CCSGG	2 cut(s)	137, 631
AsuHPI	GGTGA	2 cut(s)	271, 280
AvaI	CYCGRG	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	87, 136
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	4 cut(s)	150, 235, 283, 429
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	2 cut(s)	137, 631
BfaI	CTAG	2 cut(s)	741, 857
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	685
BlsI	GCNGC	1 cut(s)	686
Bme1390I	CCNGG	6 cut(s)	137, 150, 235, 283, 429, 631
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	250, 887
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	6 cut(s)	137, 150, 235, 283, 429, 631
BmrI	ACTGGG	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	87, 136
BpuMI	CCSGG	2 cut(s)	137, 631
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	136, 427, 502, 938
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 258, 282, 919
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	481, 567
Bse3DI	GCAATG	3 cut(s)	393, 591, 650
BseBI	CCWGG	4 cut(s)	150, 235, 283, 429
BseDI	CCNNGG	4 cut(s)	136, 427, 502, 938
BseGI	GGATG	4 cut(s)	180, 300, 397, 477
BseLI	CCNNNNNNNGG	4 cut(s)	240, 258, 282, 919
BseMI	GCAATG	3 cut(s)	393, 591, 650
BseNI	ACTGG	2 cut(s)	481, 567
BseXI	GCAGC	1 cut(s)	671
BsgI	GTGCAG	2 cut(s)	57, 639
BshFI	GGCC	4 cut(s)	251, 889, 912, 923
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	136, 204, 630
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	4 cut(s)	240, 258, 282, 919
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	251, 889, 912, 923
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	4 cut(s)	251, 889, 912, 923
BspLI	GGNNCC	1 cut(s)	806
BspPI	GGATC	5 cut(s)	12, 185, 245, 856, 873
BsrDI	GCAATG	3 cut(s)	393, 591, 650
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	481, 567
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	136, 427, 502, 938
BssMI	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
BssNI	GRCGYC	1 cut(s)	133
BssT1I	CCWWGG	2 cut(s)	502, 938
Bst2UI	CCWGG	4 cut(s)	150, 235, 283, 429
Bst4CI	ACNGT	2 cut(s)	172, 827
BstACI	GRCGYC	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	322, 627
BstDEI	CTNAG	1 cut(s)	662
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstF5I	GGATG	4 cut(s)	180, 300, 397, 477
BstKTI	GATC	7 cut(s)	7, 58, 180, 240, 594, 851, 868
BstMBI	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 886
BstNI	CCWGG	4 cut(s)	150, 235, 283, 429
BstSCI	CCNGG	6 cut(s)	135, 148, 233, 281, 427, 629
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	671
BstV2I	GAAGAC	2 cut(s)	87, 136
BsuRI	GGCC	4 cut(s)	251, 889, 912, 923
BtsCI	GGATG	4 cut(s)	180, 300, 397, 477
BtsIMutI	CAGTG	2 cut(s)	574, 709
Cac8I	GCNNGC	2 cut(s)	322, 627
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	250, 887
CseI	GACGC	2 cut(s)	141, 301
CviAII	CATG	2 cut(s)	667, 720
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	7 cut(s)	6, 57, 179, 239, 593, 850, 867
DpnII	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
DrdI	GACNNNNNNGTC	1 cut(s)	513
DseDI	GACNNNNNNGTC	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	910
Eco130I	CCWWGG	2 cut(s)	502, 938
Eco24I	GRGCYC	1 cut(s)	143
Eco57I	CTGAAG	4 cut(s)	12, 80, 685, 924
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	4 cut(s)	148, 233, 281, 427
EcoT14I	CCWWGG	2 cut(s)	502, 938
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	2 cut(s)	502, 938
FaeI	CATG	2 cut(s)	670, 723
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	2 cut(s)	666, 719
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	685
FokI	GGATG	4 cut(s)	167, 287, 404, 484
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	685
FspBI	CTAG	2 cut(s)	741, 857
GluI	GCNGC	1 cut(s)	685
HaeIII	GGCC	4 cut(s)	251, 889, 912, 923
HapII	CCGG	3 cut(s)	136, 204, 630
HgaI	GACGC	2 cut(s)	141, 301
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	670, 723
HinfI	GANTC	4 cut(s)	91, 163, 716, 783
HpaII	CCGG	3 cut(s)	136, 204, 630
HphI	GGTGA	2 cut(s)	271, 280
Hpy188I	TCNGA	7 cut(s)	31, 76, 99, 168, 459, 865, 904
Hpy99I	CGWCG	2 cut(s)	317, 320
HpyAV	CCTTC	3 cut(s)	112, 286, 899
HpyCH4III	ACNGT	2 cut(s)	172, 827
HpyCH4V	TGCA	4 cut(s)	38, 386, 620, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 886
HpyF3I	CTNAG	1 cut(s)	662
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	670, 723
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	741, 857
MaeIII	GTNAC	3 cut(s)	152, 431, 791
MalI	GATC	7 cut(s)	6, 57, 179, 239, 593, 850, 867
MboI	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
MboII	GAAGA	9 cut(s)	18, 86, 92, 138, 141, 211, 214, 455, 691
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	8 cut(s)	13, 47, 64, 144, 254, 372, 675, 749
MluNI	TGGCCA	1 cut(s)	912
MnlI	CCTC	8 cut(s)	37, 341, 362, 412, 494, 818, 829, 832
Mox20I	TGGCCA	1 cut(s)	912
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	5 cut(s)	371, 453, 674, 690, 762
MslI	CAYNNNNRTG	2 cut(s)	584, 773
Msp20I	TGGCCA	1 cut(s)	912
MspI	CCGG	3 cut(s)	136, 204, 630
MspR9I	CCNGG	6 cut(s)	137, 150, 235, 283, 429, 631
MvaI	CCWGG	4 cut(s)	150, 235, 283, 429
MwoI	GCNNNNNNNGC	2 cut(s)	626, 886
NciI	CCSGG	2 cut(s)	137, 631
NdeII	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
NlaIII	CATG	2 cut(s)	670, 723
NlaIV	GGNNCC	1 cut(s)	806
NmuCI	GTSAC	2 cut(s)	152, 791
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	4 cut(s)	91, 163, 716, 783
PflMI	CCANNNNNTGG	1 cut(s)	919
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	686
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	4 cut(s)	148, 233, 281, 427
PspGI	CCWGG	4 cut(s)	148, 233, 281, 427
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	2 cut(s)	250, 887
RseI	CAYNNNNRTG	2 cut(s)	584, 773
SaqAI	TTAA	5 cut(s)	371, 453, 674, 690, 762
SatI	GCNGC	1 cut(s)	685
Sau3AI	GATC	7 cut(s)	4, 55, 177, 237, 591, 848, 865
Sau96I	GGNCC	2 cut(s)	250, 887
ScrFI	CCNGG	6 cut(s)	137, 150, 235, 283, 429, 631
SduI	GDGCHC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	584, 773
Sse9I	AATT	8 cut(s)	13, 47, 64, 144, 254, 372, 675, 749
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	741, 857
StyD4I	CCNGG	6 cut(s)	135, 148, 233, 281, 427, 629
StyI	CCWWGG	2 cut(s)	502, 938
TaaI	ACNGT	2 cut(s)	172, 827
TasI	AATT	8 cut(s)	13, 47, 64, 144, 254, 372, 675, 749
TfiI	GAWTC	4 cut(s)	91, 163, 716, 783
Tru1I	TTAA	5 cut(s)	371, 453, 674, 690, 762
Tru9I	TTAA	5 cut(s)	371, 453, 674, 690, 762
TscAI	CASTG	2 cut(s)	574, 709
TseFI	GTSAC	2 cut(s)	152, 791
TseI	GCWGC	1 cut(s)	684
Tsp45I	GTSAC	2 cut(s)	152, 791
TspDTI	ATGAA	5 cut(s)	12, 57, 104, 708, 775
TspRI	CASTG	2 cut(s)	574, 709
Van91I	CCANNNNNTGG	1 cut(s)	919
VspI	ATTAAT	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	13, 47
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	741, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.