Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

20990386 .. 20991655

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCTACCCATTATGCCCTCCCCAATTCAACCATTTGAATATCATACTCCGTCGTCTTCCTCCAGGTATTATTCAGCAGCCGATTATCACCGACCATCATCGCCACCGAAGCCTTCCTTCAAACCATCTAGGGAACTCGAAGAATCCATCAAAAATCAAACCGACGTTACACTGAGATTCACAAAGCAACTGCTTCTGACTTTCGGCAAGAACAATAACATGGTCTACTCCCCACTGTCCATCCACGTGGTTCTTAGCATGATAGTGGCTGGGACAAAGGGCCACATTCAGGAGAAGTTGCTCCGTTTCCTCAAGTCCAAGTCCATCGACGAGCTCAATGATCTGGCCTCCAATGTCGTCCCATTGGTCTTTGCTGATGGATCCTCAAGTGGCGGGCCTCGCTTGTCATTCGCCAATGGCGTTTGGGTTGAGAAGTCTTGCCCTATAAAGCTTTCTTTCAAAGAAGTAGTGGACACTACTTACAAGGCGTCATTGAACCAAGTAGATTTTAAGACCAAGCCTGAAGAAGTGCGATGTGAAGTGAATTCATGGGCGGAGAAAGAGACCAACGGCCTTATCAAAGAGATTATTCCTGAAGGGTTAGTTACCAGATATACAGAGCTCATCCTTGCGAATGCATTATACTTCAAAGGAGCTTGGGATCAGGAGTTTAATGCATCAAAAGCACAATGGAAAAATTTTCACCTTCTGAATGGGAGCTCAATTAGGGCACCCTTCATGACCAGTTTGAAGGATCAGTATATTAGTGCCTTTGACGGTTTCAAAGTCTTAAAGCTCCCCTACAAACAAGGTGGTGATTACGAGAGACGTTTCTCCATGTTGGTGTTTCTTCCAAATAAATGGACTGGACTGCAAGCTTTGGTTGAGAGATTTTCTTCCGAGTCTGGGTTTATAGATCGATACATTCCTCACCGAGAAGTTTCAGTTGACGGAGACTTCACAGAGATGGTGGAGGATATGAACATAAGTTTAGACAATATACTCCATAAATCCTTCATTGAAGTTAATGAAGAAGGCACAGAAGCTGCTGCTGTGACTGCTGCCCTTTTTTGTGGTCGTGCGATGGCACCCAGAATTAAGATGGATTTTGTGGCAGATCACCCGTTTCTTTTTCTCATAAGAGAAGAATTGACTAGAACAGTTATGCCCAACATGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

393

Amino Acids

44.5

Weight (kDa)

6.48

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	52 - 302	7.6e-56	Serpin (serine protease inhibitor)
Serpin	PF00079	318 - 388	4.6e-17	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	730, 1087
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	393, 554
AclWI	GGATC	4 cut(s)	375, 388, 669, 762
AcsI	RAATTY	2 cut(s)	544, 697
AcuI	CTGAAG	2 cut(s)	543, 615
AcvI	CACGTG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	289, 906
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	9 cut(s)	29, 38, 121, 460, 496, 649, 751, 784, 1022
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	8 cut(s)	334, 451, 622, 656, 720, 796, 878, 1046
AluI	AGCT	8 cut(s)	334, 451, 622, 656, 720, 796, 878, 1046
Alw21I	GWGCWC	3 cut(s)	336, 624, 722
Alw26I	GTCTC	3 cut(s)	557, 820, 948
AlwI	GGATC	4 cut(s)	375, 388, 669, 762
AlwNI	CAGNNNCTG	1 cut(s)	1046
AoxI	GGCC	4 cut(s)	280, 345, 395, 571
ApeKI	GCWGC	4 cut(s)	77, 1046, 1049, 1061
ApoI	RAATTY	2 cut(s)	544, 697
AspS9I	GGNCC	2 cut(s)	280, 395
AsuHPI	GGTGA	5 cut(s)	80, 695, 827, 923, 1112
BaeGI	GKGCMC	1 cut(s)	733
BamHI	GGATCC	1 cut(s)	380
BanI	GGYRCC	2 cut(s)	730, 1087
BanII	GRGCYC	3 cut(s)	336, 624, 722
BbrPI	CACGTG	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	3 cut(s)	336, 624, 722
BbvI	GCAGC	4 cut(s)	89, 1033, 1036, 1048
BccI	CCATC	9 cut(s)	103, 133, 155, 248, 332, 371, 961, 1078, 1096
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	557, 820, 948
BfaI	CTAG	2 cut(s)	129, 1155
BisI	GCNGC	4 cut(s)	78, 1047, 1050, 1062
BlsI	GCNGC	4 cut(s)	79, 1048, 1051, 1063
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	280, 395
BmiI	GGNNCC	3 cut(s)	382, 732, 1089
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	296, 370
Bsa29I	ATCGAT	1 cut(s)	919
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 906
Bse1I	ACTGG	2 cut(s)	744, 871
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	919
BseGI	GGATG	2 cut(s)	240, 624
BseLI	CCNNNNNNNGG	2 cut(s)	289, 906
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	744, 871
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	89, 1033, 1036, 1048
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	4 cut(s)	282, 347, 397, 573
BshNI	GGYRCC	2 cut(s)	730, 1087
BshVI	ATCGAT	1 cut(s)	919
BsiHKAI	GWGCWC	3 cut(s)	336, 624, 722
BslFI	GGGAC	2 cut(s)	286, 344
BslI	CCNNNNNNNGG	2 cut(s)	289, 906
BsmAI	GTCTC	3 cut(s)	557, 820, 948
BsmBI	CGTCTC	1 cut(s)	820
BsmFI	GGGAC	2 cut(s)	286, 344
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	4 cut(s)	282, 347, 397, 573
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	4 cut(s)	336, 624, 722, 733
Bsp143I	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
BspACI	CCGC	2 cut(s)	393, 554
BspANI	GGCC	4 cut(s)	282, 347, 397, 573
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	919
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	382, 732, 1089
BspPI	GGATC	4 cut(s)	375, 388, 669, 762
BspT107I	GGYRCC	2 cut(s)	730, 1087
BspTNI	GGTCTC	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	744, 871
BssMI	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
BssNI	GRCGYC	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	237, 779, 1162
BstACI	GRCGYC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	395, 876
BstDEI	CTNAG	2 cut(s)	173, 254
BstF5I	GGATG	2 cut(s)	240, 624
BstKTI	GATC	6 cut(s)	343, 383, 664, 757, 919, 1120
BstMAI	GTCTC	3 cut(s)	557, 820, 948
BstMBI	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 399, 683, 1058
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	1177
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	4 cut(s)	89, 1033, 1036, 1048
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	2 cut(s)	247, 861
BstYI	RGATCY	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	919
BsuRI	GGCC	4 cut(s)	282, 347, 397, 573
BsuTUI	ATCGAT	1 cut(s)	919
BtgZI	GCGATG	3 cut(s)	84, 547, 1097
BtsCI	GGATG	2 cut(s)	240, 624
BtsIMutI	CAGTG	2 cut(s)	170, 233
Cac8I	GCNNGC	2 cut(s)	395, 876
CaiI	CAGNNNCTG	1 cut(s)	1046
CciI	TCATGA	1 cut(s)	738
Cfr13I	GGNCC	2 cut(s)	280, 395
ClaI	ATCGAT	1 cut(s)	919
CseI	GACGC	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	793, 828
CviAII	CATG	6 cut(s)	220, 259, 549, 739, 838, 1174
DdeI	CTNAG	2 cut(s)	173, 254
DpnI	GATC	6 cut(s)	342, 382, 663, 756, 918, 1119
DpnII	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
EciI	GGCGGA	1 cut(s)	569
Ecl136II	GAGCTC	3 cut(s)	334, 622, 720
Eco24I	GRGCYC	3 cut(s)	336, 624, 722
Eco31I	GGTCTC	1 cut(s)	557
Eco53kI	GAGCTC	3 cut(s)	334, 622, 720
Eco57I	CTGAAG	2 cut(s)	543, 615
Eco72I	CACGTG	1 cut(s)	247
EcoICRI	GAGCTC	3 cut(s)	334, 622, 720
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	62
EcoT22I	ATGCAT	2 cut(s)	640, 679
EcoT38I	GRGCYC	3 cut(s)	336, 624, 722
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	6 cut(s)	223, 262, 552, 742, 841, 1177
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	286, 344
FatI	CATG	6 cut(s)	219, 258, 548, 738, 837, 1173
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	78, 1047, 1050, 1062
FokI	GGATG	2 cut(s)	227, 611
FriOI	GRGCYC	3 cut(s)	336, 624, 722
Fsp4HI	GCNGC	4 cut(s)	78, 1047, 1050, 1062
FspBI	CTAG	2 cut(s)	129, 1155
GluI	GCNGC	4 cut(s)	78, 1047, 1050, 1062
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	4 cut(s)	282, 347, 397, 573
HgaI	GACGC	1 cut(s)	477
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	6 cut(s)	223, 262, 552, 742, 841, 1177
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	2 cut(s)	449, 876
HinfI	GANTC	3 cut(s)	143, 177, 902
HphI	GGTGA	5 cut(s)	80, 695, 827, 923, 1112
Hpy166II	GTNNAC	3 cut(s)	226, 472, 949
Hpy188I	TCNGA	3 cut(s)	198, 711, 901
Hpy188III	TCNNGA	4 cut(s)	290, 593, 665, 739
Hpy8I	GTNNAC	3 cut(s)	226, 472, 949
Hpy99I	CGWCG	3 cut(s)	55, 167, 332
HpyAV	CCTTC	8 cut(s)	123, 127, 590, 716, 745, 745, 1024, 1028
HpyCH4III	ACNGT	3 cut(s)	237, 779, 1162
HpyCH4IV	ACGT	3 cut(s)	165, 246, 829
HpyCH4V	TGCA	3 cut(s)	638, 677, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 399, 683, 1058
HpyF3I	CTNAG	2 cut(s)	173, 254
HpySE526I	ACGT	3 cut(s)	165, 246, 829
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	6 cut(s)	223, 262, 552, 742, 841, 1177
Kzo9I	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
LmnI	GCTCC	4 cut(s)	306, 653, 717, 801
Lsp1109I	GCAGC	4 cut(s)	89, 1033, 1036, 1048
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	2 cut(s)	129, 1155
MaeII	ACGT	3 cut(s)	165, 246, 829
MaeIII	GTNAC	3 cut(s)	166, 604, 1054
MalI	GATC	6 cut(s)	342, 382, 663, 756, 918, 1119
MboI	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
MboII	GAAGA	7 cut(s)	48, 152, 536, 842, 888, 1043, 1157
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	4 cut(s)	336, 624, 722, 733
MluCI	AATT	6 cut(s)	24, 544, 697, 723, 1095, 1148
MlyI	GAGTC	1 cut(s)	911
MnlI	CCTC	8 cut(s)	28, 70, 320, 358, 394, 408, 939, 967
Mph1103I	ATGCAT	2 cut(s)	640, 679
MseI	TTAA	5 cut(s)	510, 672, 791, 1026, 1098
MslI	CAYNNNNRTG	4 cut(s)	245, 263, 842, 965
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	109, 399, 683, 1058
NdeII	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
NlaIII	CATG	6 cut(s)	223, 262, 552, 742, 841, 1177
NlaIV	GGNNCC	3 cut(s)	382, 732, 1089
NmuCI	GTSAC	1 cut(s)	1054
NsiI	ATGCAT	2 cut(s)	640, 679
NspI	RCATGY	1 cut(s)	1177
PagI	TCATGA	1 cut(s)	738
PciI	ACATGT	1 cut(s)	1173
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	2 cut(s)	143, 177
PkrI	GCNGC	4 cut(s)	79, 1048, 1051, 1063
PleI	GAGTC	1 cut(s)	910
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	910
Ppu21I	YACGTR	1 cut(s)	247
PscI	ACATGT	1 cut(s)	1173
Psp124BI	GAGCTC	3 cut(s)	336, 624, 722
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	382, 732, 1089
PspPI	GGNCC	2 cut(s)	280, 395
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	1 cut(s)	380
RseI	CAYNNNNRTG	4 cut(s)	245, 263, 842, 965
SacI	GAGCTC	3 cut(s)	336, 624, 722
SaqAI	TTAA	5 cut(s)	510, 672, 791, 1026, 1098
SatI	GCNGC	4 cut(s)	78, 1047, 1050, 1062
Sau3AI	GATC	6 cut(s)	340, 380, 661, 754, 916, 1117
Sau96I	GGNCC	2 cut(s)	280, 395
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	4 cut(s)	336, 624, 722, 733
SfaNI	GCATC	1 cut(s)	686
SmiMI	CAYNNNNRTG	4 cut(s)	245, 263, 842, 965
SmlI	CTYRAG	2 cut(s)	311, 385
SmoI	CTYRAG	2 cut(s)	311, 385
Sse9I	AATT	6 cut(s)	24, 544, 697, 723, 1095, 1148
SsiI	CCGC	2 cut(s)	393, 554
SspMI	CTAG	2 cut(s)	129, 1155
SstI	GAGCTC	3 cut(s)	336, 624, 722
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	237, 779, 1162
TaiI	ACGT	3 cut(s)	168, 249, 832
TaqI	TCGA	3 cut(s)	138, 327, 919
TasI	AATT	6 cut(s)	24, 544, 697, 723, 1095, 1148
TfiI	GAWTC	2 cut(s)	143, 177
Tru1I	TTAA	5 cut(s)	510, 672, 791, 1026, 1098
Tru9I	TTAA	5 cut(s)	510, 672, 791, 1026, 1098
TscAI	CASTG	2 cut(s)	177, 240
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	4 cut(s)	77, 1046, 1049, 1061
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	5 cut(s)	537, 727, 995, 1006, 1044
TspGWI	ACGGA	3 cut(s)	39, 293, 966
TspRI	CASTG	2 cut(s)	177, 240
XapI	RAATTY	2 cut(s)	544, 697
XceI	RCATGY	1 cut(s)	1177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1099
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	129, 1155
Zsp2I	ATGCAT	2 cut(s)	640, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.