Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

78814287 .. 78823234

Gene Structure 8948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG561600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATCTGCAGATTGAAGCTCTACAAGAAAAGGGGAGAAGAAGACGCCGGGGCTCAATTCCTAGTCACAAGCTGAATCTGACGGTGGGGATCATCCCGTCCTTGAATGTGGCAGCCGGTCTGCTCGGGTTCTTCTTCGTCAAGTCCTGGATCGGGTTCTTGGCCCAATTTGGGTTTCAGGTGAAGCCCTTCACCAGGCAAGAGAACACTGTCATCCAAACTTGCGTCGTCGCTTGCTATAGCCTCGCCTTTAGCTTGGGATTCGGTTCGTATTTGGTTGCAATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTGGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCTGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTAGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGAATTGACACTTTTTAAGAACACTTTTATGGTTCTTTGCATCCGCATACCTGAGGAGGCAATTGATCTGTTTATGGTGGAGATTATGAACATGCGCCATAAATTTGATGCAGATACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGCGCAAAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

291

Amino Acids

33.12

Weight (kDa)

9.13

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	24 - 213	1.2e-37	OPT oligopeptide transporter protein
Cpn60_TCP1	PF00118	230 - 290	2.3e-11	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	408
AccII	CGCG	1 cut(s)	819
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	2 cut(s)	98, 158
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	46
AfaI	GTAC	1 cut(s)	863
AfiI	CCNNNNNNNGG	3 cut(s)	153, 171, 195
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	3 cut(s)	17, 106, 644
AjnI	CCWGG	4 cut(s)	146, 194, 322, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	8 cut(s)	20, 73, 255, 357, 393, 495, 520, 579
AluI	AGCT	8 cut(s)	20, 73, 255, 357, 393, 495, 520, 579
AlwI	GGATC	2 cut(s)	98, 158
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	113, 579
ApoI	RAATTY	1 cut(s)	743
AseI	ATTAAT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	738, 821
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	50, 526
AsuHPI	GGTGA	2 cut(s)	184, 193
AvaI	CYCGRG	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	125, 566
BciT130I	CCWGG	4 cut(s)	148, 196, 324, 380
BclI	TGATCA	2 cut(s)	486, 784
BcnI	CCSGG	2 cut(s)	50, 526
BfaI	CTAG	3 cut(s)	63, 636, 795
BfmI	CTRYAG	2 cut(s)	8, 238
BisI	GCNGC	2 cut(s)	114, 580
BlsI	GCNGC	2 cut(s)	115, 581
Bme1390I	CCNGG	6 cut(s)	50, 148, 196, 324, 380, 526
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	6 cut(s)	50, 148, 196, 324, 380, 526
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	3 cut(s)	690, 739, 808
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	50, 526
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	49, 322, 397
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 171, 195
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	376, 462
Bse21I	CCTNAGG	1 cut(s)	693
Bse3DI	GCAATG	3 cut(s)	288, 486, 545
BseBI	CCWGG	4 cut(s)	148, 196, 324, 380
BseDI	CCNNGG	3 cut(s)	49, 322, 397
BseGI	GGATG	6 cut(s)	93, 213, 292, 372, 681, 799
BseLI	CCNNNNNNNGG	3 cut(s)	153, 171, 195
BseMI	GCAATG	3 cut(s)	288, 486, 545
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	376, 462
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	2 cut(s)	125, 566
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	49, 117, 525
BslI	CCNNNNNNNGG	3 cut(s)	153, 171, 195
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	90, 150, 486, 706, 784
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	98, 158
BsrDI	GCAATG	3 cut(s)	288, 486, 545
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	376, 462
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	49, 322, 397
BssMI	GATC	5 cut(s)	90, 150, 486, 706, 784
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	4 cut(s)	148, 196, 324, 380
Bst4CI	ACNGT	2 cut(s)	85, 211
BstACI	GRCGYC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	235, 522
BstDEI	CTNAG	2 cut(s)	557, 693
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	6 cut(s)	93, 213, 292, 372, 681, 799
BstFNI	CGCG	1 cut(s)	819
BstHHI	GCGC	2 cut(s)	738, 821
BstKTI	GATC	5 cut(s)	93, 153, 489, 709, 787
BstMBI	GATC	5 cut(s)	90, 150, 486, 706, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	4 cut(s)	148, 196, 324, 380
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	6 cut(s)	48, 146, 194, 322, 378, 524
BstSFI	CTRYAG	2 cut(s)	8, 238
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	125, 566
BstV2I	GAAGAC	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	6 cut(s)	93, 213, 292, 372, 681, 799
BtsIMutI	CAGTG	2 cut(s)	207, 604
Cac8I	GCNNGC	2 cut(s)	235, 522
CfoI	GCGC	2 cut(s)	738, 821
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	3 cut(s)	54, 214, 825
Csp6I	GTAC	1 cut(s)	862
CviAII	CATG	4 cut(s)	562, 615, 733, 788
CviQI	GTAC	1 cut(s)	862
DdeI	CTNAG	2 cut(s)	557, 693
DpnI	GATC	5 cut(s)	92, 152, 488, 708, 786
DpnII	GATC	5 cut(s)	90, 150, 486, 706, 784
DrdI	GACNNNNNNGTC	1 cut(s)	408
DseDI	GACNNNNNNGTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	580
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoRII	CCWGG	4 cut(s)	146, 194, 322, 378
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	4 cut(s)	565, 618, 736, 791
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	4 cut(s)	561, 614, 732, 787
FbaI	TGATCA	2 cut(s)	486, 784
Fnu4HI	GCNGC	2 cut(s)	114, 580
FokI	GGATG	6 cut(s)	80, 200, 299, 379, 668, 786
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	114, 580
FspBI	CTAG	3 cut(s)	63, 636, 795
GlaI	GCGC	2 cut(s)	737, 820
GluI	GCNGC	2 cut(s)	114, 580
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	3 cut(s)	49, 117, 525
HgaI	GACGC	3 cut(s)	54, 214, 825
HhaI	GCGC	2 cut(s)	738, 821
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	4 cut(s)	565, 618, 736, 791
Hin6I	GCGC	2 cut(s)	736, 819
HinP1I	GCGC	2 cut(s)	736, 819
HinfI	GANTC	4 cut(s)	4, 76, 261, 611
HpaII	CCGG	3 cut(s)	49, 117, 525
HphI	GGTGA	2 cut(s)	184, 193
Hpy188I	TCNGA	2 cut(s)	81, 354
Hpy188III	TCNNGA	3 cut(s)	803, 838, 857
Hpy99I	CGWCG	3 cut(s)	230, 233, 819
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	85, 211
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	6 cut(s)	10, 281, 515, 538, 681, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	2 cut(s)	557, 693
HpySE526I	ACGT	1 cut(s)	760
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	4 cut(s)	565, 618, 736, 791
HspAI	GCGC	2 cut(s)	736, 819
Ksp22I	TGATCA	2 cut(s)	486, 784
Kzo9I	GATC	5 cut(s)	90, 150, 486, 706, 784
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	2 cut(s)	125, 566
LweI	GCATC	3 cut(s)	690, 739, 808
MaeI	CTAG	3 cut(s)	63, 636, 795
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	3 cut(s)	65, 326, 830
MalI	GATC	5 cut(s)	92, 152, 488, 708, 786
MboI	GATC	5 cut(s)	90, 150, 486, 706, 784
MboII	GAAGA	6 cut(s)	51, 54, 124, 127, 350, 586
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	7 cut(s)	57, 167, 570, 644, 702, 743, 826
MnlI	CCTC	5 cut(s)	254, 307, 688, 691, 763
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	4 cut(s)	348, 569, 585, 657
MslI	CAYNNNNRTG	2 cut(s)	479, 668
MspI	CCGG	3 cut(s)	49, 117, 525
MspR9I	CCNGG	6 cut(s)	50, 148, 196, 324, 380, 526
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	4 cut(s)	148, 196, 324, 380
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	1 cut(s)	521
NciI	CCSGG	2 cut(s)	50, 526
NdeII	GATC	5 cut(s)	90, 150, 486, 706, 784
NlaIII	CATG	4 cut(s)	565, 618, 736, 791
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	4, 76, 261, 611
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	115, 581
PshBI	ATTAAT	1 cut(s)	348
Psp6I	CCWGG	4 cut(s)	146, 194, 322, 378
PspGI	CCWGG	4 cut(s)	146, 194, 322, 378
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	863
RsaNI	GTAC	1 cut(s)	862
RseI	CAYNNNNRTG	2 cut(s)	479, 668
SaqAI	TTAA	4 cut(s)	348, 569, 585, 657
SatI	GCNGC	2 cut(s)	114, 580
Sau3AI	GATC	5 cut(s)	90, 150, 486, 706, 784
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	6 cut(s)	50, 148, 196, 324, 380, 526
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	3 cut(s)	690, 739, 808
SfcI	CTRYAG	2 cut(s)	8, 238
SmiMI	CAYNNNNRTG	2 cut(s)	479, 668
Sse9I	AATT	7 cut(s)	57, 167, 570, 644, 702, 743, 826
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	3 cut(s)	63, 636, 795
StyD4I	CCNGG	6 cut(s)	48, 146, 194, 322, 378, 524
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	85, 211
TaiI	ACGT	1 cut(s)	763
TasI	AATT	7 cut(s)	57, 167, 570, 644, 702, 743, 826
TfiI	GAWTC	4 cut(s)	4, 76, 261, 611
Tru1I	TTAA	4 cut(s)	348, 569, 585, 657
Tru9I	TTAA	4 cut(s)	348, 569, 585, 657
TscAI	CASTG	2 cut(s)	214, 604
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	113, 579
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	17, 603, 743, 824
TspRI	CASTG	2 cut(s)	214, 604
VspI	ATTAAT	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	63, 636, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.