Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

31599273 .. 31601353

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCAATCTTCCTTTGGTTAAAGAAAAGTTGGATGGTGGGAGTTCTGAAGTAACCCTGGAACAAAAAAAGAGGGATGAGGTATTTCTCAAGGATAGAATACCAAACTGGGTTGCCGGTTCTGGATATGTGGCCCTGGTTCGACAAACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

225

Amino Acids

24.85

Weight (kDa)

8.6

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 220	1.1e-41	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	148, 591
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	209, 448
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	2 cut(s)	579, 657
AluBI	AGCT	5 cut(s)	63, 88, 147, 380, 434
AluI	AGCT	5 cut(s)	63, 88, 147, 380, 434
AoxI	GGCC	2 cut(s)	341, 654
ApeKI	GCWGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	458, 655
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	449, 551
BciT130I	CCWGG	2 cut(s)	581, 659
BciVI	GTATCC	1 cut(s)	384
BclI	TGATCA	2 cut(s)	54, 471
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	94, 581, 659
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	458, 655
BmrFI	CCNGG	3 cut(s)	94, 581, 659
BmrI	ACTGGG	2 cut(s)	24, 640
BmuI	ACTGGG	2 cut(s)	24, 640
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	208, 385, 579, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 448
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	4 cut(s)	30, 249, 374, 635
Bse3DI	GCAATG	2 cut(s)	113, 400
BseBI	CCWGG	2 cut(s)	581, 659
BseDI	CCNNGG	4 cut(s)	208, 385, 579, 657
BseGI	GGATG	4 cut(s)	272, 460, 562, 604
BseLI	CCNNNNNNNGG	2 cut(s)	209, 448
BseMI	GCAATG	2 cut(s)	113, 400
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	4 cut(s)	30, 249, 374, 635
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	343, 656
BsiSI	CCGG	2 cut(s)	93, 639
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	209, 448
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	343, 656
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	54, 471
BspANI	GGCC	2 cut(s)	343, 656
BspCNI	CTCAG	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	113, 400
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	4 cut(s)	30, 249, 374, 635
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	208, 385, 579, 657
BssMI	GATC	2 cut(s)	54, 471
BssT1I	CCWWGG	2 cut(s)	208, 385
Bst2UI	CCWGG	2 cut(s)	581, 659
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	125, 301
BstF5I	GGATG	4 cut(s)	272, 460, 562, 604
BstKTI	GATC	2 cut(s)	57, 474
BstMBI	GATC	2 cut(s)	54, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	581, 659
BstNSI	RCATGY	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	3 cut(s)	92, 579, 657
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	343, 656
BtsCI	GGATG	4 cut(s)	272, 460, 562, 604
BtsIMutI	CAGTG	3 cut(s)	37, 172, 367
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	458, 655
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	4 cut(s)	130, 183, 327, 359
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	125, 301
DpnI	GATC	2 cut(s)	56, 473
DpnII	GATC	2 cut(s)	54, 471
Eco130I	CCWWGG	2 cut(s)	208, 385
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	148, 591
EcoRII	CCWGG	2 cut(s)	579, 657
EcoT14I	CCWWGG	2 cut(s)	208, 385
ErhI	CCWWGG	2 cut(s)	208, 385
FaeI	CATG	4 cut(s)	133, 186, 330, 362
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	4 cut(s)	129, 182, 326, 358
FbaI	TGATCA	2 cut(s)	54, 471
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	4 cut(s)	279, 467, 569, 611
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	148
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	343, 656
HapII	CCGG	2 cut(s)	93, 639
Hin1II	CATG	4 cut(s)	133, 186, 330, 362
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	179, 245
HpaII	CCGG	2 cut(s)	93, 639
Hpy166II	GTNNAC	2 cut(s)	295, 521
Hpy188I	TCNGA	2 cut(s)	266, 571
Hpy188III	TCNNGA	2 cut(s)	475, 645
Hpy8I	GTNNAC	2 cut(s)	295, 521
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	83, 106, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	125, 301
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	133, 186, 330, 362
Ksp22I	TGATCA	2 cut(s)	54, 471
Kzo9I	GATC	2 cut(s)	54, 471
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	2 cut(s)	56, 473
MboI	GATC	2 cut(s)	54, 471
MboII	GAAGA	3 cut(s)	154, 418, 524
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	138, 466
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	244, 534
MnlI	CCTC	4 cut(s)	294, 354, 588, 595
MseI	TTAA	4 cut(s)	137, 153, 225, 543
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	93, 639
MspR9I	CCNGG	3 cut(s)	94, 581, 659
MvaI	CCWGG	2 cut(s)	581, 659
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	54, 471
NlaIII	CATG	4 cut(s)	133, 186, 330, 362
NspI	RCATGY	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	579, 657
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	579, 657
PspPI	GGNCC	2 cut(s)	458, 655
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	137, 153, 225, 543
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	54, 471
Sau96I	GGNCC	2 cut(s)	458, 655
ScaI	AGTACT	1 cut(s)	306
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	94, 581, 659
SduI	GDGCHC	1 cut(s)	369
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	2 cut(s)	138, 466
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	92, 579, 657
StyI	CCWWGG	2 cut(s)	208, 385
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	243, 664
TasI	AATT	2 cut(s)	138, 466
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	4 cut(s)	137, 153, 225, 543
Tru9I	TTAA	4 cut(s)	137, 153, 225, 543
TscAI	CASTG	3 cut(s)	37, 172, 374
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	171, 418
TspRI	CASTG	3 cut(s)	37, 172, 374
VpaK11BI	GGWCC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.