Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

3731930 .. 3734791

Gene Structure 2862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAAAAATTGATCGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACAACTGATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAATCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAACATTTCTTATCATACAGTTTTTGGCTCAGCGTTCCAGGTTGGTGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGATTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAATCCTACTTATGTCAGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCAATCTTCCTTTGGTTAAAGAAAAGTTGGATGGTGAGAGTTCTGAAGTAACCCTGGAACAAAAAAAGAGGGATGAGGTATTTCTCAAGGATAGAATACCTCGAGGTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

314

Amino Acids

34.92

Weight (kDa)

9.2

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	90 - 291	3.5e-42	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
AbsI	CCTCGAGG	1 cut(s)	930
AciI	CCGC	1 cut(s)	290
AcuI	CTGAAG	2 cut(s)	451, 894
AfaI	GTAC	2 cut(s)	31, 609
AfiI	CCNNNNNNNGG	2 cut(s)	512, 751
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	63, 706
AjnI	CCWGG	3 cut(s)	251, 264, 882
AluBI	AGCT	6 cut(s)	24, 38, 366, 450, 683, 737
AluI	AGCT	6 cut(s)	24, 38, 366, 450, 683, 737
Alw26I	GTCTC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	3 cut(s)	24, 212, 450
AspS9I	GGNCC	2 cut(s)	98, 761
AsuHPI	GGTGA	1 cut(s)	875
AvaI	CYCGRG	1 cut(s)	930
AvaII	GGWCC	2 cut(s)	98, 761
BaeGI	GKGCMC	1 cut(s)	672
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbsI	GAAGAC	1 cut(s)	721
BbvI	GCAGC	3 cut(s)	11, 199, 437
BccI	CCATC	2 cut(s)	752, 854
BciT130I	CCWGG	3 cut(s)	253, 266, 884
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	2 cut(s)	357, 774
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	35, 507
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	3 cut(s)	25, 213, 451
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	3 cut(s)	26, 214, 452
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	3 cut(s)	253, 266, 884
Bme18I	GGWCC	2 cut(s)	98, 761
BmeT110I	CYCGRG	1 cut(s)	930
BmgT120I	GGNCC	2 cut(s)	98, 761
BmiI	GGNNCC	2 cut(s)	99, 100
BmrFI	CCNGG	3 cut(s)	253, 266, 884
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	721
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	899
BsaJI	CCNNGG	5 cut(s)	45, 190, 511, 688, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 751
Bse1I	ACTGG	2 cut(s)	333, 677
Bse3DI	GCAATG	2 cut(s)	416, 703
BseBI	CCWGG	3 cut(s)	253, 266, 884
BseDI	CCNNGG	5 cut(s)	45, 190, 511, 688, 882
BseGI	GGATG	3 cut(s)	763, 865, 907
BseLI	CCNNNNNNNGG	2 cut(s)	512, 751
BseMI	GCAATG	2 cut(s)	416, 703
BseMII	CTCAG	3 cut(s)	135, 257, 618
BseNI	ACTGG	2 cut(s)	333, 677
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	3 cut(s)	11, 199, 437
BseYI	CCCAGC	2 cut(s)	395, 665
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	930
BslFI	GGGAC	2 cut(s)	111, 352
BslI	CCNNNNNNNGG	2 cut(s)	512, 751
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	111, 352
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	13, 357, 774
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	3 cut(s)	134, 256, 617
BspLI	GGNNCC	2 cut(s)	99, 100
BspMAI	CTGCAG	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	416, 703
BsrI	ACTGG	2 cut(s)	333, 677
BssECI	CCNNGG	5 cut(s)	45, 190, 511, 688, 882
BssMI	GATC	3 cut(s)	13, 357, 774
BssT1I	CCWWGG	4 cut(s)	45, 190, 511, 688
Bst2UI	CCWGG	3 cut(s)	253, 266, 884
Bst4CI	ACNGT	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	121, 243, 428, 604
BstF5I	GGATG	3 cut(s)	763, 865, 907
BstKTI	GATC	3 cut(s)	16, 360, 777
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	13, 357, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	3 cut(s)	253, 266, 884
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	3 cut(s)	251, 264, 882
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	11, 199, 437
BstV2I	GAAGAC	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	763, 865, 907
BtsIMutI	CAGTG	3 cut(s)	340, 475, 670
Cfr13I	GGNCC	2 cut(s)	98, 761
Csp6I	GTAC	2 cut(s)	30, 608
CviAII	CATG	4 cut(s)	433, 486, 630, 662
CviQI	GTAC	2 cut(s)	30, 608
DdeI	CTNAG	4 cut(s)	121, 243, 428, 604
DpnI	GATC	3 cut(s)	15, 359, 776
DpnII	GATC	3 cut(s)	13, 357, 774
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eco130I	CCWWGG	4 cut(s)	45, 190, 511, 688
Eco47I	GGWCC	2 cut(s)	98, 761
Eco57I	CTGAAG	2 cut(s)	451, 894
Eco88I	CYCGRG	1 cut(s)	930
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	251, 264, 882
EcoT14I	CCWWGG	4 cut(s)	45, 190, 511, 688
ErhI	CCWWGG	4 cut(s)	45, 190, 511, 688
FaeI	CATG	4 cut(s)	436, 489, 633, 665
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	111, 352
FatI	CATG	4 cut(s)	432, 485, 629, 661
FbaI	TGATCA	2 cut(s)	357, 774
Fnu4HI	GCNGC	3 cut(s)	25, 213, 451
FokI	GGATG	3 cut(s)	770, 872, 914
Fsp4HI	GCNGC	3 cut(s)	25, 213, 451
FspBI	CTAG	2 cut(s)	35, 507
GluI	GCNGC	3 cut(s)	25, 213, 451
GsaI	CCCAGC	2 cut(s)	399, 669
HaeIII	GGCC	1 cut(s)	646
Hin1II	CATG	4 cut(s)	436, 489, 633, 665
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	85, 482, 548
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	2 cut(s)	598, 824
Hpy188I	TCNGA	3 cut(s)	18, 569, 874
Hpy188III	TCNNGA	1 cut(s)	778
Hpy8I	GTNNAC	2 cut(s)	598, 824
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	6 cut(s)	27, 215, 386, 409, 810, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	4 cut(s)	121, 243, 428, 604
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	4 cut(s)	436, 489, 633, 665
KflI	GGGWCCC	1 cut(s)	98
Ksp22I	TGATCA	2 cut(s)	357, 774
Kzo9I	GATC	3 cut(s)	13, 357, 774
LmnI	GCTCC	2 cut(s)	192, 447
Lsp1109I	GCAGC	3 cut(s)	11, 199, 437
MaeI	CTAG	2 cut(s)	35, 507
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	82, 877
MalI	GATC	3 cut(s)	15, 359, 776
MboI	GATC	3 cut(s)	13, 357, 774
MboII	GAAGA	3 cut(s)	457, 721, 827
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	4 cut(s)	9, 166, 441, 769
MlyI	GAGTC	2 cut(s)	79, 542
MmeI	TCCRAC	2 cut(s)	250, 837
MnlI	CCTC	8 cut(s)	130, 173, 597, 657, 891, 898, 926, 939
MseI	TTAA	4 cut(s)	440, 456, 528, 846
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	683
MspR9I	CCNGG	3 cut(s)	253, 266, 884
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	253, 266, 884
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	13, 357, 774
NlaIII	CATG	4 cut(s)	436, 489, 633, 665
NlaIV	GGNNCC	2 cut(s)	99, 100
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	930
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	26, 214, 452
PleI	GAGTC	2 cut(s)	79, 542
PpsI	GAGTC	2 cut(s)	79, 542
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	251, 264, 882
PspFI	CCCAGC	2 cut(s)	395, 665
PspGI	CCWGG	3 cut(s)	251, 264, 882
PspN4I	GGNNCC	2 cut(s)	99, 100
PspPI	GGNCC	2 cut(s)	98, 761
PspPPI	RGGWCCY	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	930
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	31, 609
RsaNI	GTAC	2 cut(s)	30, 608
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	440, 456, 528, 846
SatI	GCNGC	3 cut(s)	25, 213, 451
Sau3AI	GATC	3 cut(s)	13, 357, 774
Sau96I	GGNCC	2 cut(s)	98, 761
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	2 cut(s)	79, 542
ScrFI	CCNGG	3 cut(s)	253, 266, 884
SduI	GDGCHC	1 cut(s)	672
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	930
SinI	GGWCC	2 cut(s)	98, 761
SlaI	CTCGAG	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	914, 930
SmoI	CTYRAG	2 cut(s)	914, 930
Sse9I	AATT	4 cut(s)	9, 166, 441, 769
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	35, 507
StyD4I	CCNGG	3 cut(s)	251, 264, 882
StyI	CCWWGG	4 cut(s)	45, 190, 511, 688
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	3 cut(s)	164, 546, 931
TasI	AATT	4 cut(s)	9, 166, 441, 769
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	4 cut(s)	440, 456, 528, 846
Tru9I	TTAA	4 cut(s)	440, 456, 528, 846
TscAI	CASTG	3 cut(s)	340, 475, 677
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	24, 212, 450
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	67, 474, 721
TspRI	CASTG	3 cut(s)	340, 475, 677
VpaK11BI	GGWCC	2 cut(s)	98, 761
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	930
XspI	CTAG	2 cut(s)	35, 507
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.