Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

24695452 .. 24697649

Gene Structure 2198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGCTCACTTTGAAACTTACTCAAACTCTCAGTGATACTATTGCAGGGAGTTTTTGGCTCAGCGTTCCAGGTTGGTGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGTTGCTGTATTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGATTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAATGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGACCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCTATCTTCCTTTGGTTAAAGAAAAGTTGGGTGAGTATTCATATGATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

235

Amino Acids

26.15

Weight (kDa)

8.27

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	43 - 212	4.4e-37	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AciI	CCGC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	338, 577
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	16, 295, 532
AjnI	CCWGG	2 cut(s)	70, 83
AluBI	AGCT	5 cut(s)	192, 276, 509, 563, 657
AluI	AGCT	5 cut(s)	192, 276, 509, 563, 657
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	578
BciT130I	CCWGG	2 cut(s)	72, 85
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	1 cut(s)	183
BfaI	CTAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	72, 85
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmrFI	CCNGG	2 cut(s)	72, 85
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BoxI	GACNNNNGTC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	337, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 577
Bse1I	ACTGG	3 cut(s)	159, 378, 503
Bse3DI	GCAATG	2 cut(s)	242, 529
BseBI	CCWGG	2 cut(s)	72, 85
BseDI	CCNNGG	2 cut(s)	337, 514
BseGI	GGATG	2 cut(s)	401, 589
BseLI	CCNNNNNNNGG	2 cut(s)	338, 577
BseMI	GCAATG	2 cut(s)	242, 529
BseMII	CTCAG	3 cut(s)	46, 76, 444
BseNI	ACTGG	3 cut(s)	159, 378, 503
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	2 cut(s)	221, 491
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	338, 577
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	45, 75, 443
BsrDI	GCAATG	2 cut(s)	242, 529
BsrI	ACTGG	3 cut(s)	159, 378, 503
BssECI	CCNNGG	2 cut(s)	337, 514
BssMI	GATC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	337, 514
Bst2UI	CCWGG	2 cut(s)	72, 85
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	32, 62, 254, 430
BstF5I	GGATG	2 cut(s)	401, 589
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	72, 85
BstNSI	RCATGY	1 cut(s)	491
BstPAI	GACNNNNGTC	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	70, 83
BstSLI	GKGCMC	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	401, 589
BtsIMutI	CAGTG	3 cut(s)	40, 166, 496
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	4 cut(s)	259, 312, 456, 488
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	32, 62, 254, 430
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	337, 514
Eco47I	GGWCC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	70, 83
EcoT14I	CCWWGG	2 cut(s)	337, 514
ErhI	CCWWGG	2 cut(s)	337, 514
FaeI	CATG	4 cut(s)	262, 315, 459, 491
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	258, 311, 455, 487
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	408, 596
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	2 cut(s)	225, 495
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	472
Hin1II	CATG	4 cut(s)	262, 315, 459, 491
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	308, 374
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	424, 650
Hpy188I	TCNGA	1 cut(s)	395
Hpy8I	GTNNAC	2 cut(s)	424, 650
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	47, 212, 235, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	32, 62, 254, 430
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	262, 315, 459, 491
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	362
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	3 cut(s)	283, 547, 653
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	2 cut(s)	267, 595
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	69, 373
MnlI	CCTC	2 cut(s)	423, 483
MseI	TTAA	4 cut(s)	266, 282, 354, 672
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	509
MspR9I	CCNGG	2 cut(s)	72, 85
MvaI	CCWGG	2 cut(s)	72, 85
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	4 cut(s)	262, 315, 459, 491
NspI	RCATGY	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	70, 83
PspFI	CCCAGC	2 cut(s)	221, 491
PspGI	CCWGG	2 cut(s)	70, 83
PspPI	GGNCC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	266, 282, 354, 672
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	587
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	72, 85
SduI	GDGCHC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	267, 595
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	70, 83
StyI	CCWWGG	2 cut(s)	337, 514
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	372
TasI	AATT	2 cut(s)	267, 595
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	4 cut(s)	266, 282, 354, 672
Tru9I	TTAA	4 cut(s)	266, 282, 354, 672
TscAI	CASTG	3 cut(s)	40, 166, 503
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	300, 547, 684
TspRI	CASTG	3 cut(s)	40, 166, 503
VpaK11BI	GGWCC	1 cut(s)	587
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.