Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007419.1

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

35114 .. 35539

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007419.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggatcaaaagaattcagcttcatcttcagatggtgcagatgaggaattttgggatcttgccaattcatcattagacgaagacttgatgaatctgcagattgaagctctacaagagaaggggagaagaagacgccggggctcaattcctggtcacaagctgaatctgacggtggggatcatcccgtccttgaatgtggcagccggtctgctcgggttcttcttcgtcaagtcctggatcgggttcttggcccaatttgggtttcaggtgaagcccttcaccaggcaagagaacattgtcatccaaacttgcgtagtcgcttgctatagcctcgcctttagctgtatcaccctcaaatcattatcatcattttttagatgtatgaacaggctccttgagcccaaaatatatatagccttggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

141

Amino Acids

15.8

Weight (kDa)

8.41

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	12, 63, 185, 245
AcsI	RAATTY	2 cut(s)	13, 47
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	133
AfiI	CCNNNNNNNGG	3 cut(s)	240, 258, 282
AgsI	TTSAA	2 cut(s)	104, 193
AjnI	CCWGG	3 cut(s)	148, 233, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	20, 107, 160, 342
AluI	AGCT	4 cut(s)	20, 107, 160, 342
AlwI	GGATC	4 cut(s)	12, 63, 185, 245
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	13, 47
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	271, 280, 340
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	143, 402
BbsI	GAAGAC	2 cut(s)	87, 136
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	150, 235, 283
BcnI	CCSGG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	95, 325
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	4 cut(s)	137, 150, 235, 283
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	4 cut(s)	137, 150, 235, 283
BpiI	GAAGAC	2 cut(s)	87, 136
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	136, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 258, 282
Bse118I	RCCGGY	1 cut(s)	203
BseBI	CCWGG	3 cut(s)	150, 235, 283
BseDI	CCNNGG	2 cut(s)	136, 417
BseGI	GGATG	2 cut(s)	180, 300
BseLI	CCNNNNNNNGG	3 cut(s)	240, 258, 282
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	136, 204
BslI	CCNNNNNNNGG	3 cut(s)	240, 258, 282
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	143, 402
Bsp143I	GATC	4 cut(s)	4, 55, 177, 237
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	4 cut(s)	12, 63, 185, 245
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	136, 417
BssMI	GATC	4 cut(s)	4, 55, 177, 237
BssNI	GRCGYC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	150, 235, 283
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	180, 300
BstKTI	GATC	4 cut(s)	7, 58, 180, 240
BstMBI	GATC	4 cut(s)	4, 55, 177, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	150, 235, 283
BstSCI	CCNGG	4 cut(s)	135, 148, 233, 281
BstSFI	CTRYAG	2 cut(s)	95, 325
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	87, 136
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	180, 300
Cac8I	GCNNGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	141
DpnI	GATC	4 cut(s)	6, 57, 179, 239
DpnII	GATC	4 cut(s)	4, 55, 177, 237
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	143, 402
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	148, 233, 281
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	143, 402
ErhI	CCWWGG	1 cut(s)	417
FaiI	YATR	5 cut(s)	327, 383, 409, 411, 413
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	167, 287
FriOI	GRGCYC	2 cut(s)	143, 402
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	136, 204
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	91, 163
HpaII	CCGG	2 cut(s)	136, 204
HphI	GGTGA	3 cut(s)	271, 280, 340
Hpy188I	TCNGA	2 cut(s)	31, 168
HpyAV	CCTTC	2 cut(s)	112, 286
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	38, 97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	4, 55, 177, 237
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	4 cut(s)	6, 57, 179, 239
MboI	GATC	4 cut(s)	4, 55, 177, 237
MboII	GAAGA	6 cut(s)	18, 92, 138, 141, 211, 214
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	143, 402
MluCI	AATT	5 cut(s)	13, 47, 64, 144, 254
MnlI	CCTC	3 cut(s)	37, 341, 362
MroXI	GAANNNNTTC	1 cut(s)	275
MspI	CCGG	2 cut(s)	136, 204
MspR9I	CCNGG	4 cut(s)	137, 150, 235, 283
MvaI	CCWGG	3 cut(s)	150, 235, 283
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	4 cut(s)	4, 55, 177, 237
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	91, 163
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	148, 233, 281
PspGI	CCWGG	3 cut(s)	148, 233, 281
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	55
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	4, 55, 177, 237
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	4 cut(s)	137, 150, 235, 283
SduI	GDGCHC	2 cut(s)	143, 402
SetI	ASST	5 cut(s)	22, 109, 162, 270, 344
SfcI	CTRYAG	2 cut(s)	95, 325
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	13, 47, 64, 144, 254
StyD4I	CCNGG	4 cut(s)	135, 148, 233, 281
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	172
TasI	AATT	5 cut(s)	13, 47, 64, 144, 254
TfiI	GAWTC	2 cut(s)	91, 163
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	12, 57, 104, 398
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	13, 47
XmnI	GAANNNNTTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.