Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

63276545 .. 63279364

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG454500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

68

Amino Acids

7.88

Weight (kDa)

5.19

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	126
AciI	CCGC	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	3 cut(s)	75, 111, 199
AluI	AGCT	3 cut(s)	75, 111, 199
ApeKI	GCWGC	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	40, 115
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	40, 115
BseGI	GGATG	2 cut(s)	10, 90
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	40, 115
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	10, 90
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	10, 90
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	3 cut(s)	75, 111, 199
CviKI_1	RGCY	3 cut(s)	75, 111, 199
DdeI	CTNAG	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	126
DseDI	GACNNNNNNGTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	16, 18, 183
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	17, 97
Fsp4HI	GCNGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	27, 34, 54, 75
Lsp1109I	GCAGC	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	1 cut(s)	190
MnlI	CCTC	2 cut(s)	25, 107
MseI	TTAA	3 cut(s)	66, 189, 205
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
NlaIII	CATG	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	66, 189, 205
SatI	GCNGC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	3 cut(s)	77, 113, 201
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	115
TasI	AATT	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	66, 189, 205
Tru9I	TTAA	3 cut(s)	66, 189, 205
TseI	GCWGC	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.