Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

7170226 .. 7174809

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGATGAGAGAACATATAAACTCACCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGGACAGAAAATCCTAATCTCGGCAGCGGCGACCATTTGAGAAACCATTCTCGTCCGTGGCGCCCGGCTTCTCTCGGTTGGCCTTGGCCTTGTCGACGCCACTCGGTTTTGCCGCCCGATGGGGACCGATTGCTGCAGCTTCAAGTGTTCCCTTGTGTTTGGTGTTGCTCAAGCTTCGGCGGGAGGTGTTTGGTTTCGGTGTGGTTACGACATCTCCGGGAGGTGGTTTTTCTCATTTTGATGGTGGCTCGGATTGACGGCACGGCTCGAAATCGAAGGTGGTATGGATCGAGTCACCGAAAATGGAGCAGGTTTGTGGGGGTGTTGCTTGTGGCGGCGAGGTCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

227

Amino Acids

25.94

Weight (kDa)

9.74

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	23 - 104	1.8e-18	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	5 cut(s)	137, 360, 446, 513, 668
AclWI	GGATC	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	298
AcyI	GRCGYC	2 cut(s)	394, 430
AfiI	CCNNNNNNNGG	3 cut(s)	353, 452, 556
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	7 cut(s)	75, 111, 213, 238, 297, 472, 507
AluI	AGCT	7 cut(s)	75, 111, 213, 238, 297, 472, 507
AlwI	GGATC	1 cut(s)	628
AoxI	GGCC	2 cut(s)	413, 419
ApeKI	GCWGC	4 cut(s)	297, 357, 466, 469
AseI	ATTAAT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	4 cut(s)	28, 244, 398, 551
AsuHPI	GGTGA	2 cut(s)	16, 620
AvaII	GGWCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	284, 369, 453, 481
BccI	CCATC	2 cut(s)	446, 568
BceAI	ACGGC	2 cut(s)	607, 612
BciT130I	CCWGG	1 cut(s)	42
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	4 cut(s)	28, 244, 398, 551
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	633
BisI	GCNGC	7 cut(s)	298, 358, 361, 446, 467, 470, 669
BlsI	GCNGC	7 cut(s)	299, 359, 362, 447, 468, 471, 670
Bme1390I	CCNGG	5 cut(s)	28, 42, 244, 398, 551
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	395, 458
BmrFI	CCNGG	5 cut(s)	28, 42, 244, 398, 551
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	4 cut(s)	28, 244, 398, 551
BsaHI	GRCGYC	2 cut(s)	394, 430
BsaJI	CCNNGG	5 cut(s)	27, 40, 115, 389, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 452, 556
Bse1I	ACTGG	2 cut(s)	94, 180
Bse3DI	GCAATG	2 cut(s)	204, 263
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	5 cut(s)	27, 40, 115, 389, 416
BseGI	GGATG	2 cut(s)	10, 90
BseLI	CCNNNNNNNGG	3 cut(s)	353, 452, 556
BseMI	GCAATG	2 cut(s)	204, 263
BseNI	ACTGG	2 cut(s)	94, 180
BseXI	GCAGC	4 cut(s)	284, 369, 453, 481
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	415, 421
BshNI	GGYRCC	1 cut(s)	393
BsiSI	CCGG	4 cut(s)	27, 243, 398, 550
BslFI	GGGAC	2 cut(s)	199, 470
BslI	CCNNNNNNNGG	3 cut(s)	353, 452, 556
BsmFI	GGGAC	2 cut(s)	199, 470
BsnI	GGCC	2 cut(s)	415, 421
Bsp143I	GATC	2 cut(s)	204, 620
BspACI	CCGC	5 cut(s)	137, 360, 446, 513, 668
BspANI	GGCC	2 cut(s)	415, 421
BspLI	GGNNCC	2 cut(s)	395, 458
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	2 cut(s)	204, 263
BsrI	ACTGG	2 cut(s)	94, 180
BssECI	CCNNGG	5 cut(s)	27, 40, 115, 389, 416
BssMI	GATC	2 cut(s)	204, 620
BssNI	GRCGYC	2 cut(s)	394, 430
BssT1I	CCWWGG	2 cut(s)	115, 416
Bst2UI	CCWGG	1 cut(s)	42
BstACI	GRCGYC	2 cut(s)	394, 430
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	10, 90
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	207, 623
BstMBI	GATC	2 cut(s)	204, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	5 cut(s)	26, 40, 242, 396, 549
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	284, 369, 453, 481
BsuRI	GGCC	2 cut(s)	415, 421
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	10, 90
BtsIMutI	CAGTG	2 cut(s)	187, 322
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	438
CviAII	CATG	2 cut(s)	280, 333
DdeI	CTNAG	1 cut(s)	275
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	2 cut(s)	206, 622
DpnII	GATC	2 cut(s)	204, 620
DrdI	GACNNNNNNGTC	1 cut(s)	126
DseDI	GACNNNNNNGTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	115, 416
Eco47I	GGWCC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	115, 416
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	115, 416
FaeI	CATG	2 cut(s)	283, 336
FaiI	YATR	8 cut(s)	16, 18, 152, 158, 175, 281, 334, 618
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	2 cut(s)	199, 470
FatI	CATG	2 cut(s)	279, 332
FauI	CCCGC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	7 cut(s)	298, 358, 361, 446, 467, 470, 669
FokI	GGATG	2 cut(s)	17, 97
Fsp4HI	GCNGC	7 cut(s)	298, 358, 361, 446, 467, 470, 669
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	7 cut(s)	298, 358, 361, 446, 467, 470, 669
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	415, 421
HapII	CCGG	4 cut(s)	27, 243, 398, 550
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	2 cut(s)	394, 430
Hin1II	CATG	2 cut(s)	283, 336
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	2 cut(s)	329, 625
HpaII	CCGG	4 cut(s)	27, 243, 398, 550
HphI	GGTGA	2 cut(s)	16, 620
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	72, 585
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	1 cut(s)	603
HpyCH4V	TGCA	3 cut(s)	233, 256, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	275
Hsp92I	GRCGYC	2 cut(s)	394, 430
Hsp92II	CATG	2 cut(s)	283, 336
HspAI	GCGC	1 cut(s)	394
KasI	GGCGCC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	204, 620
LmnI	GCTCC	2 cut(s)	294, 639
Lsp1109I	GCAGC	4 cut(s)	284, 369, 453, 481
MaeIII	GTNAC	3 cut(s)	44, 537, 626
MalI	GATC	2 cut(s)	206, 622
MboI	GATC	2 cut(s)	204, 620
MboII	GAAGA	2 cut(s)	68, 304
MluCI	AATT	1 cut(s)	288
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	5 cut(s)	25, 107, 510, 547, 666
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	3 cut(s)	66, 287, 303
MslI	CAYNNNNRTG	2 cut(s)	197, 572
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	4 cut(s)	27, 243, 398, 550
MspR9I	CCNGG	5 cut(s)	28, 42, 244, 398, 551
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	239
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	4 cut(s)	28, 244, 398, 551
NdeII	GATC	2 cut(s)	204, 620
NlaIII	CATG	2 cut(s)	283, 336
NlaIV	GGNNCC	2 cut(s)	395, 458
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	7 cut(s)	299, 359, 362, 447, 468, 471, 670
PleI	GAGTC	1 cut(s)	633
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	633
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	395, 458
PspPI	GGNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	471
RseI	CAYNNNNRTG	2 cut(s)	197, 572
SalI	GTCGAC	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	66, 287, 303
SatI	GCNGC	7 cut(s)	298, 358, 361, 446, 467, 470, 669
Sau3AI	GATC	2 cut(s)	204, 620
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	5 cut(s)	28, 42, 244, 398, 551
SfcI	CTRYAG	1 cut(s)	467
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	2 cut(s)	197, 572
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	5 cut(s)	137, 360, 446, 513, 668
SspDI	GGCGCC	1 cut(s)	393
StyD4I	CCNGG	5 cut(s)	26, 40, 242, 396, 549
StyI	CCWWGG	2 cut(s)	115, 416
TaqI	TCGA	4 cut(s)	427, 601, 607, 623
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	1 cut(s)	288
TauI	GCSGC	3 cut(s)	363, 448, 671
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	66, 287, 303
Tru9I	TTAA	3 cut(s)	66, 287, 303
TscAI	CASTG	2 cut(s)	187, 322
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	4 cut(s)	297, 357, 466, 469
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	187, 322
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.