Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

14178776 .. 14179298

Gene Structure 523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGATTATATTTGAGGTTTGGCTCAATCCGTAATGTTTGTTTACAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

9.2

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 54	6e-09	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	63, 88, 147, 242
AluI	AGCT	4 cut(s)	63, 88, 147, 242
ApeKI	GCWGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	257
BclI	TGATCA	2 cut(s)	54, 279
BcnI	CCSGG	1 cut(s)	94
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	54, 279
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	54, 279
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	57, 282
BstMBI	GATC	2 cut(s)	54, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	37, 172
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	2 cut(s)	130, 183
CviJI	RGCY	6 cut(s)	63, 88, 147, 207, 242, 293
CviKI_1	RGCY	6 cut(s)	63, 88, 147, 207, 242, 293
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	56, 281
DpnII	GATC	2 cut(s)	54, 279
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	148
FaeI	CATG	2 cut(s)	133, 186
FaiI	YATR	9 cut(s)	8, 25, 131, 184, 193, 239, 271, 290, 313
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	129, 182
FbaI	TGATCA	2 cut(s)	54, 279
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	133, 186
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	83, 106, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	133, 186
Ksp22I	TGATCA	2 cut(s)	54, 279
Kzo9I	GATC	2 cut(s)	54, 279
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	43, 106, 215
Lsp1109I	GCAGC	1 cut(s)	134
MalI	GATC	2 cut(s)	56, 281
MboI	GATC	2 cut(s)	54, 279
MboII	GAAGA	2 cut(s)	154, 226
MluCI	AATT	2 cut(s)	138, 274
MnlI	CCTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	137, 153
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	54, 279
NlaIII	CATG	2 cut(s)	133, 186
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	137, 153
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	54, 279
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	6 cut(s)	65, 90, 149, 203, 234, 244
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	138, 274
StyD4I	CCNGG	1 cut(s)	92
TasI	AATT	2 cut(s)	138, 274
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	137, 153
Tru9I	TTAA	2 cut(s)	137, 153
TscAI	CASTG	2 cut(s)	37, 172
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	171, 226
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	37, 172
VpaK11BI	GGWCC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.