Rroxscaffold_2G00076910

Transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
608939 .. 612764
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076910.1

Sequence Viewer

Length: 1332 bp
ATGGGGACCGAGACGACCTCCGTGGAGATATCCGAGCCGTTGCTTGTTGACGACTCAGACAAAATCAAGGCCGTTGAGGAGGACCGAGTGCCGGAATGGAAGGAGCAGATGACGGTGAGAGGGCTGGTGGTGAGCGCCGTGCTGGGGACCCTGTTCTGCATCATCACACACAAGCTGAATCTGACGGTGGGGATCATCCCGTCGTTGAATGTGGCCGCCGGTCTGCTCGGGTTCTTCTTCGTCAAGTCCTGGACCGGGTTGTTGGCCCAATTTGGGTTTCAGGTGAAGCCCTTCACCAGGCAAGAGAACACTGTCATCCAAACTTGCGTCGTCGCTTGCTATGGCCTCGCCTTTAGCGGGGGATTCGGTTCGTATTTGGTTGCAATGGATGAGAGAACATATAAACTTATCGGGGAGGATTACCCTGGTAACACGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTTCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCTATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCAATCTTCCTTTTGTTAAAGAAAAGTTGGCAGATGGTGAGTGTTCTGAAGTAACCCTGGAACAAAAAAGAGGGATGAGGTATTTCTCAAGGATAGAATACCAAACTGGGTTGCCGGTTCTGGATATGTGGCCCTGGTGGCAATATCGACAGCAACAATGCCAATTATCTTTCCGCCTCTCAAATGGTATTTGGTGCTTTGCTCATACATCCTTGCTCCTGCTCTTGCCTTTTGCAACTCCTATGGCACTGGCCTCACAGACTGGAGTTTAG

Protein Analysis

443

Amino Acids

49.34

Weight (kDa)

6.59

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 36 - 349 4.7e-75 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 510
AciI CCGC 4 cut(s) 216, 357, 521, 1234
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 3 cut(s) 682, 766, 1128
AfaI GTAC 1 cut(s) 840
AfiI CCNNNNNNNGG 8 cut(s) 91, 144, 255, 273, 297, 357, 743, 982
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 2 cut(s) 208, 937
AjnI CCWGG 5 cut(s) 248, 296, 424, 1116, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 8 cut(s) 175, 459, 495, 597, 622, 681, 914, 968
AluI AGCT 8 cut(s) 175, 459, 495, 597, 622, 681, 914, 968
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 7 cut(s) 69, 213, 264, 343, 875, 1190, 1311
ApeKI GCWGC 1 cut(s) 681
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 6 cut(s) 6, 82, 147, 252, 265, 1191
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 5 cut(s) 127, 142, 286, 295, 1109
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 4 cut(s) 6, 82, 147, 252
BaeGI GKGCMC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 952
BbvI GCAGC 1 cut(s) 668
BccI CCATC 2 cut(s) 983, 1088
BceAI ACGGC 4 cut(s) 22, 56, 122, 450
BciT130I CCWGG 5 cut(s) 250, 298, 426, 1118, 1195
BciVI GTATCC 1 cut(s) 918
BclI TGATCA 2 cut(s) 588, 1005
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 138
BfuI GTATCC 1 cut(s) 918
BglI GCCNNNNNGGC 1 cut(s) 1198
BisI GCNGC 2 cut(s) 216, 682
BlsI GCNGC 2 cut(s) 217, 683
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 6 cut(s) 250, 256, 298, 426, 1118, 1195
Bme18I GGWCC 4 cut(s) 6, 82, 147, 252
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 6 cut(s) 6, 82, 147, 252, 265, 1191
BmiI GGNNCC 3 cut(s) 7, 148, 149
BmrFI CCNGG 6 cut(s) 250, 256, 298, 426, 1118, 1195
BmrI ACTGGG 2 cut(s) 558, 1176
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 2 cut(s) 558, 1176
BoxI GACNNNNGTC 1 cut(s) 783
BpiI GAAGAC 1 cut(s) 952
BplI GAGNNNNNCTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 1132
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 7 cut(s) 21, 424, 499, 742, 919, 1116, 1193
Bsc4I CCNNNNNNNGG 8 cut(s) 91, 144, 255, 273, 297, 357, 743, 982
Bse118I RCCGGY 2 cut(s) 218, 1174
Bse1I ACTGG 6 cut(s) 478, 564, 908, 1171, 1314, 1327
Bse3DI GCAATG 4 cut(s) 390, 588, 647, 934
BseBI CCWGG 5 cut(s) 250, 298, 426, 1118, 1195
BseDI CCNNGG 7 cut(s) 21, 424, 499, 742, 919, 1116, 1193
BseGI GGATG 8 cut(s) 195, 315, 394, 474, 806, 994, 1140, 1268
BseLI CCNNNNNNNGG 8 cut(s) 91, 144, 255, 273, 297, 357, 743, 982
BseMI GCAATG 4 cut(s) 390, 588, 647, 934
BseMII CTCAG 2 cut(s) 69, 849
BseNI ACTGG 6 cut(s) 478, 564, 908, 1171, 1314, 1327
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 903
BseXI GCAGC 1 cut(s) 668
BseYI CCCAGC 3 cut(s) 142, 626, 896
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 7 cut(s) 71, 215, 266, 345, 877, 1192, 1313
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 92, 219, 255, 1175
BslFI GGGAC 3 cut(s) 19, 160, 583
BslI CCNNNNNNNGG 8 cut(s) 91, 144, 255, 273, 297, 357, 743, 982
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 3 cut(s) 19, 160, 583
BsnI GGCC 7 cut(s) 71, 215, 266, 345, 877, 1192, 1313
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 3 cut(s) 192, 588, 1005
BspACI CCGC 4 cut(s) 216, 357, 521, 1234
BspANI GGCC 7 cut(s) 71, 215, 266, 345, 877, 1192, 1313
BspCNI CTCAG 2 cut(s) 68, 848
BspLI GGNNCC 3 cut(s) 7, 148, 149
BspPI GGATC 1 cut(s) 200
BsrDI GCAATG 4 cut(s) 390, 588, 647, 934
BsrFI RCCGGY 2 cut(s) 218, 1174
BsrI ACTGG 6 cut(s) 478, 564, 908, 1171, 1314, 1327
BssAI RCCGGY 2 cut(s) 218, 1174
BssECI CCNNGG 7 cut(s) 21, 424, 499, 742, 919, 1116, 1193
BssMI GATC 3 cut(s) 192, 588, 1005
BssT1I CCWWGG 3 cut(s) 499, 742, 919
Bst2UI CCWGG 5 cut(s) 250, 298, 426, 1118, 1195
Bst4CI ACNGT 3 cut(s) 115, 187, 313
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 337, 624
BstDEI CTNAG 3 cut(s) 55, 659, 835
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 8 cut(s) 195, 315, 394, 474, 806, 994, 1140, 1268
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 195, 591, 1008
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 192, 588, 1005
BstMWI GCNNNNNNNGC 2 cut(s) 623, 1198
BstNI CCWGG 5 cut(s) 250, 298, 426, 1118, 1195
BstNSI RCATGY 1 cut(s) 896
BstPAI GACNNNNGTC 1 cut(s) 783
BstSCI CCNGG 6 cut(s) 248, 254, 296, 424, 1116, 1193
BstSLI GKGCMC 1 cut(s) 903
BstV1I GCAGC 1 cut(s) 668
BstV2I GAAGAC 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 896
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 7 cut(s) 71, 215, 266, 345, 877, 1192, 1313
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 8 cut(s) 195, 315, 394, 474, 806, 994, 1140, 1268
BtsIMutI CAGTG 5 cut(s) 309, 571, 706, 901, 1307
Cac8I GCNNGC 2 cut(s) 337, 624
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 2 cut(s) 218, 1174
Cfr13I GGNCC 6 cut(s) 6, 82, 147, 252, 265, 1191
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 839
CviAII CATG 4 cut(s) 664, 717, 861, 893
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 3 cut(s) 55, 659, 835
DpnI GATC 3 cut(s) 194, 590, 1007
DpnII GATC 3 cut(s) 192, 588, 1005
DrdI GACNNNNNNGTC 1 cut(s) 510
DseDI GACNNNNNNGTC 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 213
EciI GGCGGA 1 cut(s) 1223
Eco130I CCWWGG 3 cut(s) 499, 742, 919
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 4 cut(s) 6, 82, 147, 252
Eco57I CTGAAG 3 cut(s) 682, 766, 1128
Eco88I CYCGRG 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 5 cut(s) 248, 296, 424, 1116, 1193
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 3 cut(s) 499, 742, 919
ErhI CCWWGG 3 cut(s) 499, 742, 919
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 667, 720, 864, 896
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FaqI GGGAC 3 cut(s) 19, 160, 583
FatI CATG 4 cut(s) 663, 716, 860, 892
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 2 cut(s) 588, 1005
Fnu4HI GCNGC 2 cut(s) 216, 682
FokI GGATG 8 cut(s) 182, 302, 401, 481, 813, 1001, 1147, 1255
Fsp4HI GCNGC 2 cut(s) 216, 682
FspBI CTAG 1 cut(s) 738
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 216, 682
GsaI CCCAGC 3 cut(s) 146, 630, 900
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 7 cut(s) 71, 215, 266, 345, 877, 1192, 1313
HapII CCGG 4 cut(s) 92, 219, 255, 1175
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 667, 720, 864, 896
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 49, 829
HindII GTYRAC 2 cut(s) 49, 829
HinfI GANTC 4 cut(s) 53, 178, 363, 713
HpaII CCGG 4 cut(s) 92, 219, 255, 1175
HphI GGTGA 5 cut(s) 127, 142, 286, 295, 1109
Hpy166II GTNNAC 3 cut(s) 49, 829, 1055
Hpy188I TCNGA 6 cut(s) 34, 58, 183, 456, 800, 1108
Hpy188III TCNNGA 2 cut(s) 1009, 1181
Hpy8I GTNNAC 3 cut(s) 49, 829, 1055
Hpy99I CGWCG 3 cut(s) 205, 332, 335
HpyAV CCTTC 2 cut(s) 94, 301
HpyCH4III ACNGT 3 cut(s) 115, 187, 313
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 6 cut(s) 159, 383, 617, 640, 1041, 1295
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 1198
HpyF3I CTNAG 3 cut(s) 55, 659, 835
HpySE526I ACGT 1 cut(s) 767
Hsp92II CATG 4 cut(s) 667, 720, 864, 896
HspAI GCGC 1 cut(s) 135
KflI GGGWCCC 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 588, 1005
Kzo9I GATC 3 cut(s) 192, 588, 1005
LmnI GCTCC 3 cut(s) 103, 678, 1281
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 738
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 2 cut(s) 428, 1111
MalI GATC 3 cut(s) 194, 590, 1007
MboI GATC 3 cut(s) 192, 588, 1005
MboII GAAGA 6 cut(s) 226, 229, 452, 688, 952, 1058
MhlI GDGCHC 1 cut(s) 903
MluCI AATT 4 cut(s) 269, 672, 1000, 1223
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 5 cut(s) 450, 671, 687, 759, 1077
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 4 cut(s) 92, 219, 255, 1175
MspR9I CCNGG 6 cut(s) 250, 256, 298, 426, 1118, 1195
MvaI CCWGG 5 cut(s) 250, 298, 426, 1118, 1195
MwoI GCNNNNNNNGC 2 cut(s) 623, 1198
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 192, 588, 1005
NlaIII CATG 4 cut(s) 667, 720, 864, 896
NlaIV GGNNCC 3 cut(s) 7, 148, 149
NspI RCATGY 1 cut(s) 896
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 178, 363, 713
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 2 cut(s) 217, 683
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 783
PshBI ATTAAT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 5 cut(s) 248, 296, 424, 1116, 1193
PspFI CCCAGC 3 cut(s) 142, 626, 896
PspGI CCWGG 5 cut(s) 248, 296, 424, 1116, 1193
PspN4I GGNNCC 3 cut(s) 7, 148, 149
PspPI GGNCC 6 cut(s) 6, 82, 147, 252, 265, 1191
PspPPI RGGWCCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 5 cut(s) 450, 671, 687, 759, 1077
SatI GCNGC 2 cut(s) 216, 682
Sau3AI GATC 3 cut(s) 192, 588, 1005
Sau96I GGNCC 6 cut(s) 6, 82, 147, 252, 265, 1191
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 6 cut(s) 250, 256, 298, 426, 1118, 1195
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 1 cut(s) 168
SinI GGWCC 4 cut(s) 6, 82, 147, 252
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 1147
SmoI CTYRAG 1 cut(s) 1147
Sse9I AATT 4 cut(s) 269, 672, 1000, 1223
SsiI CCGC 4 cut(s) 216, 357, 521, 1234
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 6 cut(s) 248, 254, 296, 424, 1116, 1193
StyI CCWWGG 3 cut(s) 499, 742, 919
TaaI ACNGT 3 cut(s) 115, 187, 313
TaiI ACGT 1 cut(s) 770
TaqI TCGA 2 cut(s) 777, 1207
TaqII GACCGA 2 cut(s) 23, 99
TasI AATT 4 cut(s) 269, 672, 1000, 1223
TatI WGTACW 1 cut(s) 838
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 3 cut(s) 178, 363, 713
Tru1I TTAA 5 cut(s) 450, 671, 687, 759, 1077
Tru9I TTAA 5 cut(s) 450, 671, 687, 759, 1077
TscAI CASTG 5 cut(s) 316, 571, 706, 908, 1314
TseI GCWGC 1 cut(s) 681
TspDTI ATGAA 2 cut(s) 705, 952
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 5 cut(s) 316, 571, 706, 908, 1314
VpaK11BI GGWCC 4 cut(s) 6, 82, 147, 252
VspI ATTAAT 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 295
XceI RCATGY 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 738
ZrmI AGTACT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.