Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

32098935 .. 32099629

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGGTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAGTCCTACTTATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

88

Amino Acids

9.83

Weight (kDa)

7.69

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 88	5.9e-14	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	231
AluBI	AGCT	2 cut(s)	63, 147
AluI	AGCT	2 cut(s)	63, 147
ApeKI	GCWGC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	30, 249
Bse3DI	GCAATG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	30, 249
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	30, 249
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	37, 172
CviAII	CATG	2 cut(s)	130, 183
CviJI	RGCY	3 cut(s)	63, 147, 207
CviKI_1	RGCY	3 cut(s)	63, 147, 207
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	133, 186
FaiI	YATR	5 cut(s)	8, 25, 131, 184, 261
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	129, 182
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	232
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	133, 186
HinfI	GANTC	2 cut(s)	179, 245
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	83, 106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	133, 186
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	43, 106, 262
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	233
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	3 cut(s)	137, 153, 225
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	133, 186
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	137, 153, 225
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	4 cut(s)	65, 90, 149, 236
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	137, 153, 225
Tru9I	TTAA	3 cut(s)	137, 153, 225
TscAI	CASTG	2 cut(s)	37, 172
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	37, 172
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.