Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

49782846 .. 49783757

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG392400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGCAAAGAAAAAGAGATGAGGTATTTCTCAAGGATAGAATACCAACTTGGCTTGCTGGTTCTGGATATCTCGTCCTAGGGGCATTATCGGTAGCAACATTGCCCATCATCTTTCCCCCTTTCAAATGGTATTTGGTTCTCTTCTCATACATCCTTGCTCCTATCCTTGCCTTCTGCAATTCCTATGGCACTGGCCTCACAGACTGCAGTTTACTTTTTACATATGGGAAAATTGGTCTTTTTGTAATTGCTTCATTAATCGGAAGTGATGGTGGAGTTATAGGCGGTTTAGCATCTTGTGGGGTGATGATGTCCATTATTGGTACAGCAGGCGAACTCATGCAAGACTTCAAGACAGGCTACCTGACTCTGTCCTCACCCAAGTCAATGTTCGTCAGTCAGCTAGTGGGAACAGCCATGGGTTGTGTAATTGCTCCATTAACGTTTTGGTTGTTTTGGACTGCCTTTGACATTGGGGCACCTGATGGCCCATATAAAGCACCGCAGGCTGTGATATTCAGGGAAATGGCGATATTAGGTACTGAAGGCTTCTCTAAGTTCCCGAAGCACTGCTTGGCTTTGTGCGGTGGGTTTTTCATGGCAGCTCTGGTTATAAACCTCCTGAGGGATGTGATTCCCAAGAGAATATCACGATTCATTCCTATTCCAATGGCCATGGCAATTCCATTCTACATCGGAGCATATTTTGCCATAGACTTATTTGTTGGGACAATGATATTGTATATATGGGAGCAAGTGAATAGGAAGGATGCGGAGGATTATGCAGTGGCAGTTGCTTCAGGTCTAATGTGTGGTGATGGGATTTGGACGATTCCATCAGCAATCCTGTCTATTTTTAAGGTGAATCCACCTATCTGTATGTACTTTGGGCCTTCTTTGAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

303

Amino Acids

32.95

Weight (kDa)

7.47

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	3 - 284	2.9e-67	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	481
AciI	CCGC	4 cut(s)	288, 506, 588, 776
AclI	AACGTT	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	675
AcuI	CTGAAG	2 cut(s)	567, 786
AfaI	GTAC	3 cut(s)	328, 544, 887
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	127, 355
AjuI	GAANNNNNNNTTGG	6 cut(s)	34, 66, 377, 409, 560, 592
AluBI	AGCT	2 cut(s)	406, 608
AluI	AGCT	2 cut(s)	406, 608
AoxI	GGCC	4 cut(s)	196, 490, 675, 893
ApeKI	GCWGC	1 cut(s)	605
AseI	ATTAAT	1 cut(s)	260
AspA2I	CCTAGG	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	491, 893
AsuHPI	GGTGA	4 cut(s)	319, 372, 830, 877
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	484
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	5 cut(s)	116, 266, 482, 815, 847
BfaI	CTAG	2 cut(s)	80, 407
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	606
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	491, 893
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	2 cut(s)	305, 763
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	79, 420, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	79, 420, 678
BseGI	GGATG	3 cut(s)	153, 637, 778
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	4 cut(s)	198, 492, 677, 895
BshNI	GGYRCC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	745
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	745
BsnI	GGCC	4 cut(s)	198, 492, 677, 895
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp19I	CCATGG	2 cut(s)	420, 678
BspACI	CCGC	4 cut(s)	288, 506, 588, 776
BspANI	GGCC	4 cut(s)	198, 492, 677, 895
BspCNI	CTCAG	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	79, 420, 678
BssT1I	CCWWGG	3 cut(s)	79, 420, 678
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	57, 334, 510
BstDEI	CTNAG	2 cut(s)	558, 626
BstDSI	CCRYGG	2 cut(s)	420, 678
BstF5I	GGATG	3 cut(s)	153, 637, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 710
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	626
BsuRI	GGCC	4 cut(s)	198, 492, 677, 895
BtgI	CCRYGG	2 cut(s)	420, 678
BtsCI	GGATG	3 cut(s)	153, 637, 778
BtsI	GCAGTG	2 cut(s)	571, 795
BtsIMutI	CAGTG	3 cut(s)	192, 571, 795
Cac8I	GCNNGC	3 cut(s)	57, 334, 510
Cfr13I	GGNCC	2 cut(s)	491, 893
Csp6I	GTAC	3 cut(s)	327, 543, 886
CviAII	CATG	4 cut(s)	343, 421, 601, 679
CviQI	GTAC	3 cut(s)	327, 543, 886
DdeI	CTNAG	2 cut(s)	558, 626
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	3 cut(s)	79, 420, 678
Eco32I	GATATC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	567, 786
Eco81I	CCTNAGG	1 cut(s)	626
EcoRV	GATATC	1 cut(s)	71
EcoT14I	CCWWGG	3 cut(s)	79, 420, 678
ErhI	CCWWGG	3 cut(s)	79, 420, 678
FaeI	CATG	4 cut(s)	346, 424, 604, 682
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	4 cut(s)	342, 420, 600, 678
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	3 cut(s)	140, 644, 785
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	80, 407
GluI	GCNGC	1 cut(s)	606
HaeIII	GGCC	4 cut(s)	198, 492, 677, 895
Hin1II	CATG	4 cut(s)	346, 424, 604, 682
HinfI	GANTC	5 cut(s)	370, 637, 657, 835, 868
HphI	GGTGA	4 cut(s)	319, 372, 830, 877
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	266, 701
Hpy188III	TCNNGA	5 cut(s)	66, 355, 565, 625, 654
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	184, 542, 763, 906
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	180, 210, 346, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 710
HpyF3I	CTNAG	2 cut(s)	558, 626
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	346, 424, 604, 682
LmnI	GCTCC	5 cut(s)	4, 166, 442, 701, 754
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	305, 763
MaeI	CTAG	2 cut(s)	80, 407
MaeII	ACGT	1 cut(s)	446
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	5 cut(s)	181, 234, 249, 432, 684
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	16, 209, 388, 621, 632, 772
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	3 cut(s)	260, 443, 861
Msp20I	TGGCCA	1 cut(s)	677
MwoI	GCNNNNNNNGC	2 cut(s)	509, 710
NcoI	CCATGG	2 cut(s)	420, 678
NdeI	CATATG	1 cut(s)	226
NlaIII	CATG	4 cut(s)	346, 424, 604, 682
NlaIV	GGNNCC	1 cut(s)	483
PfeI	GAWTC	4 cut(s)	637, 657, 835, 868
PflFI	GACNNNGTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	617
Psp1406I	AACGTT	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	491, 893
PstI	CTGCAG	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	373
RsaI	GTAC	3 cut(s)	328, 544, 887
RsaNI	GTAC	3 cut(s)	327, 543, 886
SaqAI	TTAA	3 cut(s)	260, 443, 861
SatI	GCNGC	1 cut(s)	606
Sau96I	GGNCC	2 cut(s)	491, 893
SchI	GAGTC	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	2 cut(s)	305, 763
SfcI	CTRYAG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	181, 234, 249, 432, 684
SsiI	CCGC	4 cut(s)	288, 506, 588, 776
SspMI	CTAG	2 cut(s)	80, 407
StyI	CCWWGG	3 cut(s)	79, 420, 678
TaiI	ACGT	1 cut(s)	449
TasI	AATT	5 cut(s)	181, 234, 249, 432, 684
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	4 cut(s)	637, 657, 835, 868
Tru1I	TTAA	3 cut(s)	260, 443, 861
Tru9I	TTAA	3 cut(s)	260, 443, 861
TscAI	CASTG	3 cut(s)	199, 578, 795
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	246, 589, 649
TspRI	CASTG	3 cut(s)	199, 578, 795
Tth111I	GACNNNGTC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XmaJI	CCTAGG	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.