Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012106.1

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

3655 .. 4602

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgtgcttagcagatggtgagagttctgaagtaaccctggaacaaaaaaagagggatgaggtatttctcaaggatagaataccaaactgggttgccggttctggatatgtggccctggtggcaatatcgacagcaacaatgccaattatctttccgcctctcaaatggtatttggtgctgtgctcatacacccttgctcctgctcttgccttttgcaactcctatggcactggcctcacagactggagtttagcttcaacttatgggaaaataggtcttttcatcattgcttcattagtgggaagtgatggtggggttatagctggtttagctgcttgtggggtgatgatgtccattgtctctaccgcagccgatctcatgcaagacttcaagacaggttacctcaccatgtcctcggccaagtctatgtttatcagccagttagtgggaacagccatgggttgtgtgatagctccattaacattttggttgttttggactgcttttgatattggctcacctgatggtccgtacaaagcaccatatgctgtaatattcagggaaatggcaattttaggtattgaaggcttctccgagctgccaaagcactgcttggctatgtgttgcggtttctttgtggctgctttggtgataaacctcttgagggacgtgactcctaagaaggtatcccaatatattcctattccaatggctatggcagtcccattctacatcggagcctactttgccattgatatgtttgttgggacagtgatattgtttatatgggagcgaatgaataggcagaattcagaggattttgcaggggcagtcgcttcgggtctaatatgcggtgatgggatttggacaattccatccgcgatcctctctatcttcaaggtcaatccacccatctgcatgtactttgggccttcttggagcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

315

Amino Acids

34.04

Weight (kDa)

5.03

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccII	CGCG	1 cut(s)	881
AciI	CCGC	5 cut(s)	155, 366, 627, 852, 879
AclWI	GGATC	1 cut(s)	877
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	533, 923
AfiI	CCNNNNNNNGG	2 cut(s)	445, 664
AgsI	TTSAA	4 cut(s)	258, 391, 584, 898
AjiI	CACGTC	1 cut(s)	670
AjnI	CCWGG	2 cut(s)	36, 114
AluBI	AGCT	6 cut(s)	254, 323, 332, 473, 598, 945
AluI	AGCT	6 cut(s)	254, 323, 332, 473, 598, 945
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	4 cut(s)	111, 232, 417, 929
ApeKI	GCWGC	5 cut(s)	332, 368, 598, 641, 942
ApoI	RAATTY	1 cut(s)	808
AspS9I	GGNCC	3 cut(s)	112, 527, 929
AsuHPI	GGTGA	6 cut(s)	29, 355, 397, 510, 661, 866
AvaII	GGWCC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	319, 380, 585, 628
BccI	CCATC	6 cut(s)	8, 302, 518, 851, 883, 920
BcgI	CGANNNNNNTGC	2 cut(s)	819, 853
BciT130I	CCWGG	2 cut(s)	38, 116
BciVI	GTATCC	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	946
BfuI	GTATCC	1 cut(s)	697
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	333, 369, 599, 642, 943
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	5 cut(s)	334, 370, 600, 643, 944
Bme1390I	CCNGG	2 cut(s)	38, 116
Bme18I	GGWCC	1 cut(s)	527
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	3 cut(s)	112, 527, 929
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	38, 116
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	7
BpuEI	CTTGAG	2 cut(s)	53, 682
BsaJI	CCNNGG	4 cut(s)	36, 114, 414, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 664
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	4 cut(s)	92, 235, 248, 439
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	38, 116
BseDI	CCNNGG	4 cut(s)	36, 114, 414, 456
BseGI	GGATG	2 cut(s)	61, 875
BseLI	CCNNNNNNNGG	2 cut(s)	445, 664
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	4 cut(s)	92, 235, 248, 439
BseXI	GCAGC	4 cut(s)	319, 380, 585, 628
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	4 cut(s)	113, 234, 419, 931
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	3 cut(s)	680, 707, 781
BslI	CCNNNNNNNGG	2 cut(s)	445, 664
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	3 cut(s)	680, 707, 781
BsnI	GGCC	4 cut(s)	113, 234, 419, 931
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	373, 882
Bsp1720I	GCTNAGC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	5 cut(s)	155, 366, 627, 852, 879
BspANI	GGCC	4 cut(s)	113, 234, 419, 931
BspFNI	CGCG	1 cut(s)	881
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	877
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	4 cut(s)	92, 235, 248, 439
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	36, 114, 414, 456
BssMI	GATC	2 cut(s)	373, 882
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	38, 116
Bst4CI	ACNGT	1 cut(s)	772
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstDEI	CTNAG	2 cut(s)	7, 678
BstDSI	CCRYGG	1 cut(s)	456
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	61, 875
BstFNI	CGCG	1 cut(s)	881
BstKTI	GATC	2 cut(s)	376, 885
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	2 cut(s)	373, 882
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 329, 545, 604, 746
BstNI	CCWGG	2 cut(s)	38, 116
BstNSI	RCATGY	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	36, 114
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	4 cut(s)	319, 380, 585, 628
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	4 cut(s)	113, 234, 419, 931
BtgI	CCRYGG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	61, 875
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	3 cut(s)	228, 607, 777
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	112, 527, 929
Csp6I	GTAC	2 cut(s)	532, 922
CviAII	CATG	4 cut(s)	379, 409, 457, 919
CviQI	GTAC	2 cut(s)	532, 922
DdeI	CTNAG	2 cut(s)	7, 678
DpnI	GATC	2 cut(s)	375, 884
DpnII	GATC	2 cut(s)	373, 882
EaeI	YGGCCR	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	36, 114
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	382, 412, 460, 922
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	3 cut(s)	680, 707, 781
FatI	CATG	4 cut(s)	378, 408, 456, 918
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	333, 369, 599, 642, 943
FokI	GGATG	2 cut(s)	68, 862
Fsp4HI	GCNGC	5 cut(s)	333, 369, 599, 642, 943
FspBI	CTAG	1 cut(s)	946
GluI	GCNGC	5 cut(s)	333, 369, 599, 642, 943
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	113, 234, 419, 931
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	4 cut(s)	382, 412, 460, 922
HinfI	GANTC	1 cut(s)	673
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	6 cut(s)	29, 355, 397, 510, 661, 866
Hpy188I	TCNGA	4 cut(s)	28, 595, 737, 814
Hpy188III	TCNNGA	3 cut(s)	102, 391, 661
HpyAV	CCTTC	3 cut(s)	578, 676, 942
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	4 cut(s)	216, 382, 824, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 329, 545, 604, 746
HpyF3I	CTNAG	2 cut(s)	7, 678
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	382, 412, 460, 922
Kzo9I	GATC	2 cut(s)	373, 882
LmnI	GCTCC	5 cut(s)	202, 478, 737, 790, 939
Lsp1109I	GCAGC	4 cut(s)	319, 380, 585, 628
MaeI	CTAG	1 cut(s)	946
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	31, 398, 670
MalI	GATC	2 cut(s)	375, 884
MboI	GATC	2 cut(s)	373, 882
MboII	GAAGA	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	144, 570, 808, 870
MlyI	GAGTC	1 cut(s)	667
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	755, 917
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	38, 116
MvaI	CCWGG	2 cut(s)	38, 116
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	5 cut(s)	119, 329, 545, 604, 746
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	373, 882
NlaIII	CATG	4 cut(s)	382, 412, 460, 922
NlaIV	GGNNCC	1 cut(s)	739
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	1 cut(s)	922
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	334, 370, 600, 643, 944
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	36, 114
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	36, 114
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	112, 527, 929
RsaI	GTAC	2 cut(s)	533, 923
RsaNI	GTAC	2 cut(s)	532, 922
RseI	CAYNNNNRTG	2 cut(s)	755, 917
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	5 cut(s)	333, 369, 599, 642, 943
Sau3AI	GATC	2 cut(s)	373, 882
Sau96I	GGNCC	3 cut(s)	112, 527, 929
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	38, 116
SduI	GDGCHC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	755, 917
SmlI	CTYRAG	2 cut(s)	68, 661
SmoI	CTYRAG	2 cut(s)	68, 661
Sse9I	AATT	4 cut(s)	144, 570, 808, 870
SsiI	CCGC	5 cut(s)	155, 366, 627, 852, 879
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	946
StyD4I	CCNGG	2 cut(s)	36, 114
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	144, 570, 808, 870
TatI	WGTACW	1 cut(s)	921
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	3 cut(s)	235, 614, 777
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	5 cut(s)	332, 368, 598, 641, 942
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	3 cut(s)	271, 282, 812
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	3 cut(s)	235, 614, 777
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	808
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XspI	CTAG	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.