Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

3096472 .. 3097442

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACATGGGGATTCGGTTCGTATTTGGTTGCAATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTAACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGCTGGATGACTGGTTTCCTGGTTATTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGTTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAAATTTCCTAGCCTTGAATTGACACTTTTTAAGAACACTTTTATGGTGAAGTTTGGTTCCTTCATTTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

150

Amino Acids

16.87

Weight (kDa)

8.33

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	30 - 144	2.8e-19	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	73, 129
AluBI	AGCT	4 cut(s)	108, 144, 246, 271
AluI	AGCT	4 cut(s)	108, 144, 246, 271
ApoI	RAATTY	1 cut(s)	380
AseI	ATTAAT	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	436
BciT130I	CCWGG	2 cut(s)	75, 131
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	75, 131, 277
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	3 cut(s)	75, 131, 277
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	73, 148
Bse1I	ACTGG	2 cut(s)	127, 213
Bse3DI	GCAATG	3 cut(s)	39, 237, 296
BseBI	CCWGG	2 cut(s)	75, 131
BseDI	CCNNGG	2 cut(s)	73, 148
BseGI	GGATG	2 cut(s)	43, 123
BseMI	GCAATG	3 cut(s)	39, 237, 296
BseNI	ACTGG	2 cut(s)	127, 213
BsgI	GTGCAG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	436
BsrDI	GCAATG	3 cut(s)	39, 237, 296
BsrI	ACTGG	2 cut(s)	127, 213
BssECI	CCNNGG	2 cut(s)	73, 148
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	75, 131
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	43, 123
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	75, 131
BstSCI	CCNGG	3 cut(s)	73, 129, 275
BtsCI	GGATG	2 cut(s)	43, 123
BtsIMutI	CAGTG	2 cut(s)	220, 355
Cac8I	GCNNGC	1 cut(s)	273
CviAII	CATG	3 cut(s)	6, 313, 366
CviJI	RGCY	5 cut(s)	108, 144, 246, 271, 390
CviKI_1	RGCY	5 cut(s)	108, 144, 246, 271, 390
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	73, 129
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	9, 316, 369
FaiI	YATR	9 cut(s)	7, 49, 51, 185, 191, 208, 314, 367, 422
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	5, 312, 365
FbaI	TGATCA	1 cut(s)	237
FokI	GGATG	2 cut(s)	50, 130
FspBI	CTAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	3 cut(s)	9, 316, 369
HinfI	GANTC	2 cut(s)	12, 362
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	32, 266, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	9, 316, 369
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	60, 67, 87, 100, 108, 116, 143, 226, 289
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	101, 337
MluCI	AATT	3 cut(s)	321, 380, 395
MnlI	CCTC	1 cut(s)	58
MseI	TTAA	4 cut(s)	99, 320, 336, 408
MslI	CAYNNNNRTG	2 cut(s)	230, 419
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	75, 131, 277
MvaI	CCWGG	2 cut(s)	75, 131
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	3 cut(s)	9, 316, 369
NlaIV	GGNNCC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	12, 362
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	73, 129
PspGI	CCWGG	2 cut(s)	73, 129
PspN4I	GGNNCC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	230, 419
SaqAI	TTAA	4 cut(s)	99, 320, 336, 408
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	75, 131, 277
SetI	ASST	5 cut(s)	110, 146, 183, 248, 273
SmiMI	CAYNNNNRTG	2 cut(s)	230, 419
Sse9I	AATT	3 cut(s)	321, 380, 395
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	73, 129, 275
StyI	CCWWGG	1 cut(s)	148
TasI	AATT	3 cut(s)	321, 380, 395
TfiI	GAWTC	2 cut(s)	12, 362
Tru1I	TTAA	4 cut(s)	99, 320, 336, 408
Tru9I	TTAA	4 cut(s)	99, 320, 336, 408
TscAI	CASTG	2 cut(s)	220, 355
TspDTI	ATGAA	2 cut(s)	354, 430
TspRI	CASTG	2 cut(s)	220, 355
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.