Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

25742594 .. 25742979

Gene Structure 386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG218500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGGATCATCCCGTCCTTGAATGTGGCAGCCGGTCTGCTCGGGTTCTTCTTCGTCAAGTCCTGGATCGGGTTCTTGGCCCAATTTGGGTTTCAGGTGAAGCCCTTCACCAGGCAAGAGAACACTGTCATCCAAACTTGCGTTGTCGCTTGCTATAGCCTCGCCTTTAGCTGGGGATTCGGTTCGTATTTGGTTGCAATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTCACAGGGCAGAAGATGTTATTAATCCGAGCTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

93

Amino Acids

10.43

Weight (kDa)

5.62

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	2 - 69	1.2e-14	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	14, 74
AfiI	CCNNNNNNNGG	4 cut(s)	69, 87, 111, 171
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	62, 110, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	171, 273
AluI	AGCT	2 cut(s)	171, 273
AlwI	GGATC	2 cut(s)	14, 74
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	100, 109
AvaI	CYCGRG	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	41
BciT130I	CCWGG	3 cut(s)	64, 112, 240
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	64, 112, 240
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	64, 112, 240
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 87, 111, 171
Bse118I	RCCGGY	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	64, 112, 240
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	9, 129, 208
BseLI	CCNNNNNNNGG	4 cut(s)	69, 87, 111, 171
BseMI	GCAATG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	69, 87, 111, 171
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	6, 66
BspANI	GGCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	14, 74
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	6, 66
Bst2UI	CCWGG	3 cut(s)	64, 112, 240
Bst4CI	ACNGT	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	9, 129, 208
BstKTI	GATC	2 cut(s)	9, 69
BstMBI	GATC	2 cut(s)	6, 66
BstNI	CCWGG	3 cut(s)	64, 112, 240
BstSCI	CCNGG	3 cut(s)	62, 110, 238
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	9, 129, 208
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	79
CviJI	RGCY	6 cut(s)	32, 80, 103, 159, 171, 273
CviKI_1	RGCY	6 cut(s)	32, 80, 103, 159, 171, 273
DpnI	GATC	2 cut(s)	8, 68
DpnII	GATC	2 cut(s)	6, 66
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	62, 110, 238
FaiI	YATR	3 cut(s)	156, 214, 216
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	116, 215
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	33
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	100, 109
Hpy188I	TCNGA	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	6, 66
Lsp1109I	GCAGC	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	8, 68
MboI	GATC	2 cut(s)	6, 66
MboII	GAAGA	3 cut(s)	40, 43, 266
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	2 cut(s)	170, 223
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	3 cut(s)	64, 112, 240
MvaI	CCWGG	3 cut(s)	64, 112, 240
NdeII	GATC	2 cut(s)	6, 66
NmuCI	GTSAC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	3 cut(s)	62, 110, 238
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	62, 110, 238
PspPI	GGNCC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	6, 66
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	64, 112, 240
SetI	ASST	3 cut(s)	99, 173, 275
SfcI	CTRYAG	1 cut(s)	154
Sse9I	AATT	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	62, 110, 238
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.