Rh2BG679600

Transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
88951112 .. 88955531
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG679600.1

Sequence Viewer

Length: 1491 bp
ATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTTCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCTATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTATACAGAGCAATCTTCCTTTGGTTAAAGAAAAGTTGGATGGTGAGAGTTCTGAAGTAACCCTGGAACAAAAAAAGAGGGATGAGGTATTTCTCAAGGATGGAATACCAAACTGGGTTGCCGGTTCTGGATATGTGGCCCTGGTGGCAATATCGACAGCAACAATGCCAATTATCTTTCCGCCTCTCAAATGGTATTTGGTGCTGTGCTCATACATCCTTGCTCCTGCTCTTGCCTTTTGCAACTCCTATGGCACTGGCCTCACAGACTGGAGTTTAGCTTCAACTTATGGGAAAATAGGTCTTTTCATCATTGCTTCATTAGTGGGAAGTGATGGTGGGGTTATAGCTGGTTTAGCTGCTTGTGGGGTGATGATGTCCATTGTCTCTACCGCAGCTGATCTCATGCAAGACTTCAAGACAGGTTACCTCACCATGTCCTCGGCCAAGTCTATGTTTATCAGCCAGTTAGTGGGAACAGCCATGGGATGTGTGATAGCTCCATTAACATTTTGGTTGTTTTGGACTGCTTTTGATATTGGCTCACCTGATGGTCCGTACAAAGCACCATATGCTGTAATATTCAGGGAAATGGCAATTTTAGGTATTGAAGGCTTCTCCGAGCTGCCAAAGCACTGCTTGGCTATGTGTTGCGGTTTCTTTGTGGCTGCCTTGGTGATAAACCTCTTGAGGGACGTGACTCCTAAGAAGGTATCCCAATATATTCCTATTCCAATGGCTATGGCAGTCCCATTCTACATCGGAGCCTACTTTGCCATTGATATGTTTGTCGGGACAGTGATATTGTTTATATGGGAGCGAATGAATAGGCAGAATTCAGAGGATTTTGCAGGGGCAGTCGCTTCGGGTCTAATATGCGGTGATGGGATTTGGACAATTCCGTCCGCGATCCTCTCTATCTTCAAGGTCAATCCACCCATCTGCATGTACTTTGGGCCTTCTTTGAGCAGCTAG

Protein Analysis

496

Amino Acids

53.89

Weight (kDa)

6.22

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 477 1.7e-112 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1417
AccB7I CCANNNNNTGG 1 cut(s) 988
AccI GTMKAC 1 cut(s) 520
AccII CGCG 1 cut(s) 1424
AciI CCGC 5 cut(s) 698, 909, 1170, 1395, 1422
AclWI GGATC 1 cut(s) 1420
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 1 cut(s) 1351
AcuI CTGAAG 3 cut(s) 148, 232, 591
AfaI GTAC 3 cut(s) 306, 1076, 1466
AfiI CCNNNNNNNGG 4 cut(s) 209, 448, 988, 1207
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 403, 801, 934, 1127, 1441
AjiI CACGTC 1 cut(s) 1213
AjnI CCWGG 2 cut(s) 579, 657
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 1 cut(s) 1420
AoxI GGCC 5 cut(s) 341, 654, 775, 960, 1472
ApeKI GCWGC 6 cut(s) 147, 875, 911, 1141, 1184, 1485
ApoI RAATTY 1 cut(s) 1351
AspS9I GGNCC 3 cut(s) 655, 1070, 1472
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 6 cut(s) 572, 898, 940, 1053, 1204, 1409
AvaII GGWCC 1 cut(s) 1070
BaeGI GKGCMC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 728
BbvI GCAGC 5 cut(s) 134, 862, 923, 1128, 1171
BccI CCATC 7 cut(s) 449, 551, 611, 845, 1061, 1394, 1463
BcgI CGANNNNNNTGC 2 cut(s) 1362, 1396
BciT130I CCWGG 2 cut(s) 581, 659
BciVI GTATCC 2 cut(s) 384, 1240
BclI TGATCA 2 cut(s) 54, 471
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 907
BfaI CTAG 2 cut(s) 204, 1489
BfuI GTATCC 2 cut(s) 384, 1240
BglI GCCNNNNNGGC 1 cut(s) 662
BisI GCNGC 6 cut(s) 148, 876, 912, 1142, 1185, 1486
BlsI GCNGC 6 cut(s) 149, 877, 913, 1143, 1186, 1487
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 3 cut(s) 94, 581, 659
Bme18I GGWCC 1 cut(s) 1070
BmgBI CACGTC 1 cut(s) 1213
BmgT120I GGNCC 3 cut(s) 655, 1070, 1472
BmiI GGNNCC 1 cut(s) 1282
BmrFI CCNGG 3 cut(s) 94, 581, 659
BmrI ACTGGG 2 cut(s) 24, 640
BmuI ACTGGG 2 cut(s) 24, 640
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 808
BpuEI CTTGAG 2 cut(s) 596, 1225
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 7 cut(s) 208, 385, 579, 657, 957, 999, 1188
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 448, 988, 1207
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 6 cut(s) 30, 374, 635, 778, 791, 982
Bse3DI GCAATG 4 cut(s) 54, 113, 400, 828
BseBI CCWGG 2 cut(s) 581, 659
BseDI CCNNGG 7 cut(s) 208, 385, 579, 657, 957, 999, 1188
BseGI GGATG 7 cut(s) 272, 460, 562, 604, 622, 732, 1010
BseLI CCNNNNNNNGG 4 cut(s) 209, 448, 988, 1207
BseMI GCAATG 4 cut(s) 54, 113, 400, 828
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 6 cut(s) 30, 374, 635, 778, 791, 982
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 5 cut(s) 134, 862, 923, 1128, 1171
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 1424
BshFI GGCC 5 cut(s) 343, 656, 777, 962, 1474
BsiHKAI GWGCWC 1 cut(s) 728
BsiSI CCGG 2 cut(s) 93, 639
BslFI GGGAC 4 cut(s) 49, 1223, 1250, 1324
BslI CCNNNNNNNGG 4 cut(s) 209, 448, 988, 1207
BsmAI GTCTC 1 cut(s) 907
BsmFI GGGAC 4 cut(s) 49, 1223, 1250, 1324
BsnI GGCC 5 cut(s) 343, 656, 777, 962, 1474
Bsp1286I GDGCHC 2 cut(s) 369, 728
Bsp143I GATC 4 cut(s) 54, 471, 916, 1425
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 5 cut(s) 698, 909, 1170, 1395, 1422
BspANI GGCC 5 cut(s) 343, 656, 777, 962, 1474
BspCNI CTCAG 1 cut(s) 314
BspFNI CGCG 1 cut(s) 1424
BspLI GGNNCC 1 cut(s) 1282
BspPI GGATC 1 cut(s) 1420
BsrDI GCAATG 4 cut(s) 54, 113, 400, 828
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 6 cut(s) 30, 374, 635, 778, 791, 982
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 7 cut(s) 208, 385, 579, 657, 957, 999, 1188
BssMI GATC 4 cut(s) 54, 471, 916, 1425
BssNAI GTATAC 1 cut(s) 521
BssT1I CCWWGG 4 cut(s) 208, 385, 999, 1188
Bst1107I GTATAC 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 581, 659
Bst4CI ACNGT 1 cut(s) 1315
BstAPI GCANNNNNTGC 2 cut(s) 89, 1088
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 125, 301, 1221
BstDSI CCRYGG 1 cut(s) 999
BstEII GGTNACC 1 cut(s) 941
BstF5I GGATG 7 cut(s) 272, 460, 562, 604, 622, 732, 1010
BstFNI CGCG 1 cut(s) 1424
BstKTI GATC 4 cut(s) 57, 474, 919, 1428
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 4 cut(s) 54, 471, 916, 1425
BstMWI GCNNNNNNNGC 6 cut(s) 89, 662, 872, 1088, 1147, 1289
BstNI CCWGG 2 cut(s) 581, 659
BstNSI RCATGY 2 cut(s) 362, 1465
BstPAI GACNNNNGTC 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 92, 579, 657
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 1 cut(s) 1424
BstV1I GCAGC 5 cut(s) 134, 862, 923, 1128, 1171
BstV2I GAAGAC 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 521
BsuI GTATCC 2 cut(s) 384, 1240
BsuRI GGCC 5 cut(s) 343, 656, 777, 962, 1474
BtgI CCRYGG 1 cut(s) 999
BtrI CACGTC 1 cut(s) 1213
BtsCI GGATG 7 cut(s) 272, 460, 562, 604, 622, 732, 1010
BtsI GCAGTG 1 cut(s) 1150
BtsIMutI CAGTG 6 cut(s) 37, 172, 367, 771, 1150, 1320
Cac8I GCNNGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 655, 1070, 1472
Csp6I GTAC 3 cut(s) 305, 1075, 1465
CviAII CATG 8 cut(s) 130, 183, 327, 359, 922, 952, 1000, 1462
CviQI GTAC 3 cut(s) 305, 1075, 1465
DdeI CTNAG 3 cut(s) 125, 301, 1221
DpnI GATC 4 cut(s) 56, 473, 918, 1427
DpnII GATC 4 cut(s) 54, 471, 916, 1425
DrdI GACNNNNNNGTC 1 cut(s) 1417
DseDI GACNNNNNNGTC 1 cut(s) 1417
EaeI YGGCCR 1 cut(s) 960
EciI GGCGGA 1 cut(s) 687
Eco130I CCWWGG 4 cut(s) 208, 385, 999, 1188
Eco47I GGWCC 1 cut(s) 1070
Eco57I CTGAAG 3 cut(s) 148, 232, 591
Eco91I GGTNACC 1 cut(s) 941
EcoO65I GGTNACC 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 1351
EcoRII CCWGG 2 cut(s) 579, 657
EcoT14I CCWWGG 4 cut(s) 208, 385, 999, 1188
ErhI CCWWGG 4 cut(s) 208, 385, 999, 1188
FaeI CATG 8 cut(s) 133, 186, 330, 362, 925, 955, 1003, 1465
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 1139, 1171
FaqI GGGAC 4 cut(s) 49, 1223, 1250, 1324
FatI CATG 8 cut(s) 129, 182, 326, 358, 921, 951, 999, 1461
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 2 cut(s) 54, 471
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 6 cut(s) 148, 876, 912, 1142, 1185, 1486
FokI GGATG 7 cut(s) 279, 467, 569, 611, 629, 719, 1017
Fsp4HI GCNGC 6 cut(s) 148, 876, 912, 1142, 1185, 1486
FspBI CTAG 2 cut(s) 204, 1489
GluI GCNGC 6 cut(s) 148, 876, 912, 1142, 1185, 1486
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 808
HaeIII GGCC 5 cut(s) 343, 656, 777, 962, 1474
HapII CCGG 2 cut(s) 93, 639
Hin1II CATG 8 cut(s) 133, 186, 330, 362, 925, 955, 1003, 1465
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 179, 1216
HpaII CCGG 2 cut(s) 93, 639
HphI GGTGA 6 cut(s) 572, 898, 940, 1053, 1204, 1409
Hpy166II GTNNAC 2 cut(s) 295, 521
Hpy188I TCNGA 5 cut(s) 266, 571, 1138, 1280, 1357
Hpy188III TCNNGA 5 cut(s) 475, 645, 934, 1204, 1309
Hpy8I GTNNAC 2 cut(s) 295, 521
HpyAV CCTTC 3 cut(s) 1121, 1219, 1485
HpyCH4III ACNGT 1 cut(s) 1315
HpyCH4IV ACGT 2 cut(s) 233, 1212
HpyCH4V TGCA 7 cut(s) 83, 106, 507, 759, 925, 1367, 1461
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 662, 872, 1088, 1147, 1289
HpyF3I CTNAG 3 cut(s) 125, 301, 1221
HpySE526I ACGT 2 cut(s) 233, 1212
Hsp92II CATG 8 cut(s) 133, 186, 330, 362, 925, 955, 1003, 1465
Ksp22I TGATCA 2 cut(s) 54, 471
Kzo9I GATC 4 cut(s) 54, 471, 916, 1425
LmnI GCTCC 5 cut(s) 144, 745, 1021, 1280, 1333
Lsp1109I GCAGC 5 cut(s) 134, 862, 923, 1128, 1171
MaeI CTAG 2 cut(s) 204, 1489
MaeII ACGT 2 cut(s) 233, 1212
MaeIII GTNAC 3 cut(s) 574, 941, 1213
MalI GATC 4 cut(s) 56, 473, 918, 1427
MboI GATC 4 cut(s) 54, 471, 916, 1425
MboII GAAGA 4 cut(s) 154, 418, 524, 1429
MhlI GDGCHC 2 cut(s) 369, 728
MluCI AATT 6 cut(s) 138, 466, 687, 1113, 1351, 1413
MlyI GAGTC 1 cut(s) 1210
MmeI TCCRAC 2 cut(s) 244, 534
MseI TTAA 5 cut(s) 137, 153, 225, 543, 1022
MslI CAYNNNNRTG 3 cut(s) 47, 1298, 1460
MspA1I CMGCKG 2 cut(s) 380, 914
MspI CCGG 2 cut(s) 93, 639
MspR9I CCNGG 3 cut(s) 94, 581, 659
MvaI CCWGG 2 cut(s) 581, 659
MvnI CGCG 1 cut(s) 1424
MwoI GCNNNNNNNGC 6 cut(s) 89, 662, 872, 1088, 1147, 1289
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 999
NdeI CATATG 1 cut(s) 1087
NdeII GATC 4 cut(s) 54, 471, 916, 1425
NlaIII CATG 8 cut(s) 133, 186, 330, 362, 925, 955, 1003, 1465
NlaIV GGNNCC 1 cut(s) 1282
NmeAIII GCCGAG 1 cut(s) 938
NmuCI GTSAC 1 cut(s) 1213
NspI RCATGY 2 cut(s) 362, 1465
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 988
PkrI GCNGC 6 cut(s) 149, 877, 913, 1143, 1186, 1487
PleI GAGTC 1 cut(s) 1210
PpsI GAGTC 1 cut(s) 1210
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 579, 657
PspEI GGTNACC 1 cut(s) 941
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 2 cut(s) 579, 657
PspN4I GGNNCC 1 cut(s) 1282
PspPI GGNCC 3 cut(s) 655, 1070, 1472
PvuII CAGCTG 2 cut(s) 380, 914
RsaI GTAC 3 cut(s) 306, 1076, 1466
RsaNI GTAC 3 cut(s) 305, 1075, 1465
RseI CAYNNNNRTG 3 cut(s) 47, 1298, 1460
SaqAI TTAA 5 cut(s) 137, 153, 225, 543, 1022
SatI GCNGC 6 cut(s) 148, 876, 912, 1142, 1185, 1486
Sau3AI GATC 4 cut(s) 54, 471, 916, 1425
Sau96I GGNCC 3 cut(s) 655, 1070, 1472
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 1 cut(s) 1210
ScrFI CCNGG 3 cut(s) 94, 581, 659
SduI GDGCHC 2 cut(s) 369, 728
SinI GGWCC 1 cut(s) 1070
SmiMI CAYNNNNRTG 3 cut(s) 47, 1298, 1460
SmlI CTYRAG 2 cut(s) 611, 1204
SmoI CTYRAG 2 cut(s) 611, 1204
Sse9I AATT 6 cut(s) 138, 466, 687, 1113, 1351, 1413
SsiI CCGC 5 cut(s) 698, 909, 1170, 1395, 1422
SspI AATATT 1 cut(s) 1098
SspMI CTAG 2 cut(s) 204, 1489
StyD4I CCNGG 3 cut(s) 92, 579, 657
StyI CCWWGG 4 cut(s) 208, 385, 999, 1188
TaaI ACNGT 1 cut(s) 1315
TaiI ACGT 2 cut(s) 236, 1215
TaqI TCGA 2 cut(s) 243, 671
TasI AATT 6 cut(s) 138, 466, 687, 1113, 1351, 1413
TatI WGTACW 2 cut(s) 304, 1464
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 5 cut(s) 137, 153, 225, 543, 1022
Tru9I TTAA 5 cut(s) 137, 153, 225, 543, 1022
TscAI CASTG 6 cut(s) 37, 172, 374, 778, 1157, 1320
TseFI GTSAC 1 cut(s) 1213
TseI GCWGC 6 cut(s) 147, 875, 911, 1141, 1184, 1485
Tsp45I GTSAC 1 cut(s) 1213
TspDTI ATGAA 5 cut(s) 171, 418, 814, 825, 1355
TspGWI ACGGA 2 cut(s) 1062, 1407
TspRI CASTG 6 cut(s) 37, 172, 374, 778, 1157, 1320
Van91I CCANNNNNTGG 1 cut(s) 988
VpaK11BI GGWCC 1 cut(s) 1070
XapI RAATTY 1 cut(s) 1351
XceI RCATGY 2 cut(s) 362, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 1026
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 2 cut(s) 204, 1489
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.