Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Reverse (-)

29100205 .. 29102765

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGTAGCATTTCTTATCGTACAGGCATTAGTATTAAAAAAATACCTAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAATTTAAGGTTGTTTACGGTTTTATACTCAGGAGTTTTTGGCTCAGCGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTCCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTGGGGCTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAGCTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCAATCTTCCTTTGGTTAAAGAAAAGTTGGATGGTGGGAGTTCTGAAGTAACCCTGGAACAAAAAAAGAGGGATGAGGTATTTCTCAAGGATAGAATACCAAACTGGGTTGCCGGTTCTGGATATGTGGCCCTGGTTCGACAAACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

339

Amino Acids

37.68

Weight (kDa)

8.84

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	103 - 334	1.6e-46	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	329
AcuI	CTGAAG	2 cut(s)	490, 933
AfaI	GTAC	2 cut(s)	120, 648
AfiI	CCNNNNNNNGG	2 cut(s)	551, 790
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	194, 745
AjnI	CCWGG	3 cut(s)	303, 921, 999
AluBI	AGCT	6 cut(s)	154, 405, 430, 489, 722, 776
AluI	AGCT	6 cut(s)	154, 405, 430, 489, 722, 776
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	30, 219
AoxI	GGCC	3 cut(s)	240, 683, 996
ApeKI	GCWGC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	240, 800, 997
AsuC2I	CCSGG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	760
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	791, 893
BciT130I	CCWGG	3 cut(s)	305, 923, 1001
BciVI	GTATCC	1 cut(s)	726
BclI	TGATCA	2 cut(s)	396, 813
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	30, 219
BfaI	CTAG	2 cut(s)	146, 546
BfmI	CTRYAG	2 cut(s)	102, 198
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	1 cut(s)	490
BlpI	GCTNAGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	491
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	4 cut(s)	305, 436, 923, 1001
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	3 cut(s)	240, 800, 997
BmrFI	CCNGG	4 cut(s)	305, 436, 923, 1001
BmrI	ACTGGG	2 cut(s)	366, 982
BmuI	ACTGGG	2 cut(s)	366, 982
BoxI	GACNNNNGTC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	760
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	574
Bpu1102I	GCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	214, 938
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	5 cut(s)	79, 550, 727, 921, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 790
Bse118I	RCCGGY	1 cut(s)	980
Bse1I	ACTGG	4 cut(s)	372, 591, 716, 977
Bse3DI	GCAATG	2 cut(s)	455, 742
BseBI	CCWGG	3 cut(s)	305, 923, 1001
BseDI	CCNNGG	5 cut(s)	79, 550, 727, 921, 999
BseGI	GGATG	4 cut(s)	614, 802, 904, 946
BseLI	CCNNNNNNNGG	2 cut(s)	551, 790
BseMI	GCAATG	2 cut(s)	455, 742
BseMII	CTCAG	4 cut(s)	24, 294, 309, 657
BseNI	ACTGG	4 cut(s)	372, 591, 716, 977
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	1 cut(s)	476
BseYI	CCCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	242, 685, 998
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	435, 981
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	551, 790
BsmAI	GTCTC	2 cut(s)	30, 219
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	242, 685, 998
Bsp1286I	GDGCHC	2 cut(s)	156, 711
Bsp143I	GATC	2 cut(s)	396, 813
Bsp1720I	GCTNAGC	1 cut(s)	295
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	3 cut(s)	242, 685, 998
BspCNI	CTCAG	4 cut(s)	23, 293, 308, 656
BsrDI	GCAATG	2 cut(s)	455, 742
BsrFI	RCCGGY	1 cut(s)	980
BsrI	ACTGG	4 cut(s)	372, 591, 716, 977
BssAI	RCCGGY	1 cut(s)	980
BssECI	CCNNGG	5 cut(s)	79, 550, 727, 921, 999
BssMI	GATC	2 cut(s)	396, 813
BssT1I	CCWWGG	3 cut(s)	79, 550, 727
Bst2UI	CCWGG	3 cut(s)	305, 923, 1001
Bst4CI	ACNGT	2 cut(s)	51, 271
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	5 cut(s)	10, 280, 295, 467, 643
BstF5I	GGATG	4 cut(s)	614, 802, 904, 946
BstKTI	GATC	2 cut(s)	399, 816
BstMAI	GTCTC	2 cut(s)	30, 219
BstMBI	GATC	2 cut(s)	396, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	3 cut(s)	305, 923, 1001
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	591
BstSCI	CCNGG	4 cut(s)	303, 434, 921, 999
BstSFI	CTRYAG	2 cut(s)	102, 198
BstSLI	GKGCMC	1 cut(s)	711
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	242, 685, 998
BtsCI	GGATG	4 cut(s)	614, 802, 904, 946
BtsIMutI	CAGTG	3 cut(s)	379, 514, 709
Cac8I	GCNNGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	980
Cfr13I	GGNCC	3 cut(s)	240, 800, 997
Csp6I	GTAC	2 cut(s)	119, 647
CviAII	CATG	4 cut(s)	472, 525, 669, 701
CviQI	GTAC	2 cut(s)	119, 647
DdeI	CTNAG	5 cut(s)	10, 280, 295, 467, 643
DpnI	GATC	2 cut(s)	398, 815
DpnII	GATC	2 cut(s)	396, 813
DrdI	GACNNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	3 cut(s)	79, 550, 727
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	490, 933
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	303, 921, 999
EcoT14I	CCWWGG	3 cut(s)	79, 550, 727
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	3 cut(s)	79, 550, 727
FaeI	CATG	4 cut(s)	475, 528, 672, 704
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	471, 524, 668, 700
FbaI	TGATCA	2 cut(s)	396, 813
Fnu4HI	GCNGC	1 cut(s)	490
FokI	GGATG	4 cut(s)	621, 809, 911, 953
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	2 cut(s)	146, 546
GluI	GCNGC	1 cut(s)	490
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	242, 685, 998
HapII	CCGG	2 cut(s)	435, 981
Hin1II	CATG	4 cut(s)	475, 528, 672, 704
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	3 cut(s)	227, 521, 587
HpaII	CCGG	2 cut(s)	435, 981
Hpy166II	GTNNAC	3 cut(s)	267, 637, 863
Hpy188I	TCNGA	2 cut(s)	608, 913
Hpy188III	TCNNGA	3 cut(s)	282, 817, 987
Hpy8I	GTNNAC	3 cut(s)	267, 637, 863
HpyCH4III	ACNGT	2 cut(s)	51, 271
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	3 cut(s)	425, 448, 849
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	5 cut(s)	10, 280, 295, 467, 643
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	4 cut(s)	475, 528, 672, 704
Ksp22I	TGATCA	2 cut(s)	396, 813
Kzo9I	GATC	2 cut(s)	396, 813
LmnI	GCTCC	2 cut(s)	81, 486
Lsp1109I	GCAGC	1 cut(s)	476
MaeI	CTAG	2 cut(s)	146, 546
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	2 cut(s)	398, 815
MboI	GATC	2 cut(s)	396, 813
MboII	GAAGA	3 cut(s)	496, 760, 866
MhlI	GDGCHC	2 cut(s)	156, 711
MluCI	AATT	4 cut(s)	55, 253, 480, 808
MlyI	GAGTC	2 cut(s)	221, 581
MmeI	TCCRAC	3 cut(s)	289, 586, 876
MnlI	CCTC	6 cut(s)	19, 62, 636, 696, 930, 937
MseI	TTAA	7 cut(s)	134, 245, 257, 479, 495, 567, 885
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	2 cut(s)	435, 981
MspR9I	CCNGG	4 cut(s)	305, 436, 923, 1001
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	3 cut(s)	305, 923, 1001
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	2 cut(s)	396, 813
NlaIII	CATG	4 cut(s)	475, 528, 672, 704
NspI	RCATGY	1 cut(s)	704
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	2 cut(s)	221, 581
PpsI	GAGTC	2 cut(s)	221, 581
PshAI	GACNNNNGTC	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	303, 921, 999
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	3 cut(s)	303, 921, 999
PspPI	GGNCC	3 cut(s)	240, 800, 997
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	2 cut(s)	120, 648
RsaNI	GTAC	2 cut(s)	119, 647
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	7 cut(s)	134, 245, 257, 479, 495, 567, 885
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	2 cut(s)	396, 813
Sau96I	GGNCC	3 cut(s)	240, 800, 997
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	2 cut(s)	221, 581
ScrFI	CCNGG	4 cut(s)	305, 436, 923, 1001
SduI	GDGCHC	2 cut(s)	156, 711
SfcI	CTRYAG	2 cut(s)	102, 198
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	229, 953
SmoI	CTYRAG	2 cut(s)	229, 953
Sse9I	AATT	4 cut(s)	55, 253, 480, 808
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	146, 546
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	303, 434, 921, 999
StyI	CCWWGG	3 cut(s)	79, 550, 727
TaaI	ACNGT	2 cut(s)	51, 271
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	53, 585, 1006
TasI	AATT	4 cut(s)	55, 253, 480, 808
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	7 cut(s)	134, 245, 257, 479, 495, 567, 885
Tru9I	TTAA	7 cut(s)	134, 245, 257, 479, 495, 567, 885
TscAI	CASTG	3 cut(s)	379, 514, 716
TseI	GCWGC	1 cut(s)	489
TspDTI	ATGAA	2 cut(s)	513, 760
TspRI	CASTG	3 cut(s)	379, 514, 716
VpaK11BI	GGWCC	1 cut(s)	800
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	146, 546
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.