Transporter
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 341 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1570 |
| AccII | CGCG | 1 cut(s) | 146 |
| AciI | CCGC | 6 cut(s) | 366, 729, 813, 923, 1220, 1491 |
| AclWI | GGATC | 3 cut(s) | 933, 979, 2002 |
| AcoI | YGGCCR | 1 cut(s) | 884 |
| AcsI | RAATTY | 1 cut(s) | 1372 |
| AcuI | CTGAAG | 1 cut(s) | 775 |
| AfaI | GTAC | 2 cut(s) | 1658, 2048 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 109, 282, 306, 538, 752, 1324, 1570, 1789 |
| AflIII | ACRYGT | 1 cut(s) | 1881 |
| AgsI | TTSAA | 4 cut(s) | 946, 1516, 1924, 2023 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1639 |
| AhlI | ACTAGT | 1 cut(s) | 1420 |
| AjiI | CACGTC | 1 cut(s) | 1430 |
| AjnI | CCWGG | 5 cut(s) | 305, 433, 549, 967, 1737 |
| Alw21I | GWGCWC | 2 cut(s) | 655, 1771 |
| Alw26I | GTCTC | 5 cut(s) | 5, 821, 1046, 1406, 1489 |
| AlwI | GGATC | 3 cut(s) | 933, 979, 2002 |
| AoxI | GGCC | 8 cut(s) | 265, 352, 511, 884, 1237, 1326, 1357, 2053 |
| ApeKI | GCWGC | 4 cut(s) | 690, 1457, 1493, 1723 |
| ApoI | RAATTY | 1 cut(s) | 1372 |
| AseI | ATTAAT | 1 cut(s) | 890 |
| AspLEI | GCGC | 3 cut(s) | 146, 148, 227 |
| AspS9I | GGNCC | 7 cut(s) | 112, 156, 547, 1237, 1327, 1652, 2054 |
| AsuC2I | CCSGG | 1 cut(s) | 637 |
| AsuHPI | GGTGA | 7 cut(s) | 151, 166, 1066, 1154, 1480, 1635, 1991 |
| AvaII | GGWCC | 4 cut(s) | 112, 156, 547, 1652 |
| AxyI | CCTNAGG | 1 cut(s) | 1787 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 551, 584 |
| BalI | TGGCCA | 1 cut(s) | 886 |
| BanII | GRGCYC | 1 cut(s) | 1771 |
| Bbv12I | GWGCWC | 2 cut(s) | 655, 1771 |
| BbvCI | CCTCAGC | 1 cut(s) | 1540 |
| BbvI | GCAGC | 4 cut(s) | 677, 1469, 1505, 1710 |
| BccI | CCATC | 8 cut(s) | 1031, 1133, 1427, 1643, 1834, 1883, 1976, 2008 |
| BceAI | ACGGC | 2 cut(s) | 22, 367 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1944, 1978 |
| BciT130I | CCWGG | 5 cut(s) | 307, 435, 551, 969, 1739 |
| BciVI | GTATCC | 2 cut(s) | 579, 927 |
| BcnI | CCSGG | 1 cut(s) | 637 |
| BcoDI | GTCTC | 5 cut(s) | 5, 821, 1046, 1406, 1489 |
| BcuI | ACTAGT | 1 cut(s) | 1420 |
| BfmI | CTRYAG | 2 cut(s) | 1152, 1254 |
| BfoI | RGCGCY | 1 cut(s) | 228 |
| BfuAI | ACCTGC | 1 cut(s) | 341 |
| BfuI | GTATCC | 2 cut(s) | 579, 927 |
| BisI | GCNGC | 4 cut(s) | 691, 1458, 1494, 1724 |
| BlsI | GCNGC | 4 cut(s) | 692, 1459, 1495, 1725 |
| Bme1390I | CCNGG | 6 cut(s) | 307, 435, 551, 637, 969, 1739 |
| Bme18I | GGWCC | 4 cut(s) | 112, 156, 547, 1652 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1639 |
| BmgBI | CACGTC | 1 cut(s) | 1430 |
| BmgT120I | GGNCC | 7 cut(s) | 112, 156, 547, 1237, 1327, 1652, 2054 |
| BmiI | GGNNCC | 3 cut(s) | 157, 158, 379 |
| BmrFI | CCNGG | 6 cut(s) | 307, 435, 551, 637, 969, 1739 |
| BmrI | ACTGGG | 1 cut(s) | 567 |
| BmsI | GCATC | 3 cut(s) | 177, 800, 1713 |
| BmuI | ACTGGG | 1 cut(s) | 567 |
| BoxI | GACNNNNGTC | 1 cut(s) | 792 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1700, 1732 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1540 |
| BpuEI | CTTGAG | 1 cut(s) | 92 |
| BpuMI | CCSGG | 1 cut(s) | 637 |
| BsaAI | YACGTR | 1 cut(s) | 567 |
| BsaI | GGTCTC | 3 cut(s) | 821, 1046, 1406 |
| BsaJI | CCNNGG | 4 cut(s) | 21, 433, 508, 1581 |
| BsaWI | WCCGGW | 1 cut(s) | 1162 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1758, 1788 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 109, 282, 306, 538, 752, 1324, 1570, 1789 |
| Bse1I | ACTGG | 7 cut(s) | 268, 487, 573, 625, 917, 1360, 1373 |
| Bse21I | CCTNAGG | 1 cut(s) | 1787 |
| Bse3DI | GCAATG | 4 cut(s) | 399, 597, 1410, 1732 |
| BseBI | CCWGG | 5 cut(s) | 307, 435, 551, 969, 1739 |
| BseDI | CCNNGG | 4 cut(s) | 21, 433, 508, 1581 |
| BseGI | GGATG | 6 cut(s) | 324, 403, 483, 815, 1042, 1798 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 109, 282, 306, 538, 752, 1324, 1570, 1789 |
| BseMI | GCAATG | 4 cut(s) | 399, 597, 1410, 1732 |
| BseMII | CTCAG | 5 cut(s) | 139, 858, 1554, 1731, 1778 |
| BseNI | ACTGG | 7 cut(s) | 268, 487, 573, 625, 917, 1360, 1373 |
| BsePI | GCGCGC | 1 cut(s) | 144 |
| BseXI | GCAGC | 4 cut(s) | 677, 1469, 1505, 1710 |
| BseYI | CCCAGC | 3 cut(s) | 227, 905, 1448 |
| BsgI | GTGCAG | 1 cut(s) | 1245 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshFI | GGCC | 8 cut(s) | 267, 354, 513, 886, 1239, 1328, 1359, 2055 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 2 cut(s) | 655, 1771 |
| BsiSI | CCGG | 3 cut(s) | 636, 1163, 1325 |
| BslFI | GGGAC | 6 cut(s) | 83, 169, 592, 923, 1832, 1906 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 109, 282, 306, 538, 752, 1324, 1570, 1789 |
| BsmAI | GTCTC | 5 cut(s) | 5, 821, 1046, 1406, 1489 |
| BsmFI | GGGAC | 6 cut(s) | 83, 169, 592, 923, 1832, 1906 |
| BsnI | GGCC | 8 cut(s) | 267, 354, 513, 886, 1239, 1328, 1359, 2055 |
| Bso31I | GGTCTC | 3 cut(s) | 821, 1046, 1406 |
| Bsp1286I | GDGCHC | 2 cut(s) | 655, 1771 |
| Bsp143I | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| Bsp19I | CCATGG | 1 cut(s) | 1581 |
| BspACI | CCGC | 6 cut(s) | 366, 729, 813, 923, 1220, 1491 |
| BspANI | GGCC | 8 cut(s) | 267, 354, 513, 886, 1239, 1328, 1359, 2055 |
| BspCNI | CTCAG | 5 cut(s) | 138, 857, 1553, 1730, 1779 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspLI | GGNNCC | 3 cut(s) | 157, 158, 379 |
| BspMI | ACCTGC | 1 cut(s) | 341 |
| BspPI | GGATC | 3 cut(s) | 933, 979, 2002 |
| BspTNI | GGTCTC | 3 cut(s) | 821, 1046, 1406 |
| BsrDI | GCAATG | 4 cut(s) | 399, 597, 1410, 1732 |
| BsrI | ACTGG | 7 cut(s) | 268, 487, 573, 625, 917, 1360, 1373 |
| BssECI | CCNNGG | 4 cut(s) | 21, 433, 508, 1581 |
| BssHII | GCGCGC | 1 cut(s) | 144 |
| BssMI | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| BssT1I | CCWWGG | 2 cut(s) | 508, 1581 |
| Bst2UI | CCWGG | 5 cut(s) | 307, 435, 551, 969, 1739 |
| Bst4CI | ACNGT | 7 cut(s) | 196, 322, 765, 1075, 1148, 1668, 1897 |
| Bst6I | CTCTTC | 3 cut(s) | 167, 1176, 1409 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1670, 1871 |
| BstBAI | YACGTR | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 3 cut(s) | 146, 633, 1565 |
| BstDEI | CTNAG | 7 cut(s) | 125, 247, 844, 1540, 1717, 1787, 1803 |
| BstDSI | CCRYGG | 2 cut(s) | 21, 1581 |
| BstEII | GGTNACC | 1 cut(s) | 1641 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 304, 536 |
| BstF5I | GGATG | 6 cut(s) | 324, 403, 483, 815, 1042, 1798 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstH2I | RGCGCY | 1 cut(s) | 228 |
| BstHHI | GCGC | 3 cut(s) | 146, 148, 227 |
| BstKTI | GATC | 6 cut(s) | 63, 120, 928, 974, 1501, 2010 |
| BstMAI | GTCTC | 5 cut(s) | 5, 821, 1046, 1406, 1489 |
| BstMBI | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 130, 510, 1107, 1454, 1670, 1710, 1729, 1871, 2012 |
| BstNI | CCWGG | 5 cut(s) | 307, 435, 551, 969, 1739 |
| BstNSI | RCATGY | 2 cut(s) | 1885, 2047 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 792 |
| BstPI | GGTNACC | 1 cut(s) | 1641 |
| BstSCI | CCNGG | 6 cut(s) | 305, 433, 549, 635, 967, 1737 |
| BstSFI | CTRYAG | 2 cut(s) | 1152, 1254 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 4 cut(s) | 677, 1469, 1505, 1710 |
| BstX2I | RGATCY | 2 cut(s) | 925, 971 |
| BstYI | RGATCY | 2 cut(s) | 925, 971 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1787 |
| BsuI | GTATCC | 2 cut(s) | 579, 927 |
| BsuRI | GGCC | 8 cut(s) | 267, 354, 513, 886, 1239, 1328, 1359, 2055 |
| BtgI | CCRYGG | 2 cut(s) | 21, 1581 |
| BtgZI | GCGATG | 1 cut(s) | 1853 |
| BtrI | CACGTC | 1 cut(s) | 1430 |
| BtsCI | GGATG | 6 cut(s) | 324, 403, 483, 815, 1042, 1798 |
| BtsIMutI | CAGTG | 5 cut(s) | 580, 618, 761, 1353, 1902 |
| BveI | ACCTGC | 1 cut(s) | 341 |
| Cac8I | GCNNGC | 3 cut(s) | 146, 633, 1565 |
| CfoI | GCGC | 3 cut(s) | 146, 148, 227 |
| Cfr13I | GGNCC | 7 cut(s) | 112, 156, 547, 1237, 1327, 1652, 2054 |
| CseI | GACGC | 2 cut(s) | 6, 1943 |
| Csp6I | GTAC | 2 cut(s) | 1657, 2047 |
| CviAII | CATG | 8 cut(s) | 214, 490, 726, 870, 1504, 1582, 1882, 2044 |
| CviQI | GTAC | 2 cut(s) | 1657, 2047 |
| DdeI | CTNAG | 7 cut(s) | 125, 247, 844, 1540, 1717, 1787, 1803 |
| DpnI | GATC | 6 cut(s) | 62, 119, 927, 973, 1500, 2009 |
| DpnII | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1639 |
| EaeI | YGGCCR | 1 cut(s) | 884 |
| Eam1104I | CTCTTC | 3 cut(s) | 167, 1176, 1409 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1639 |
| EarI | CTCTTC | 3 cut(s) | 167, 1176, 1409 |
| Ecl136II | GAGCTC | 1 cut(s) | 1769 |
| Eco130I | CCWWGG | 2 cut(s) | 508, 1581 |
| Eco24I | GRGCYC | 1 cut(s) | 1771 |
| Eco31I | GGTCTC | 3 cut(s) | 821, 1046, 1406 |
| Eco47I | GGWCC | 4 cut(s) | 112, 156, 547, 1652 |
| Eco53kI | GAGCTC | 1 cut(s) | 1769 |
| Eco57I | CTGAAG | 1 cut(s) | 775 |
| Eco81I | CCTNAGG | 1 cut(s) | 1787 |
| Eco91I | GGTNACC | 1 cut(s) | 1641 |
| EcoICRI | GAGCTC | 1 cut(s) | 1769 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 304, 536 |
| EcoO109I | RGGNCCY | 1 cut(s) | 156 |
| EcoO65I | GGTNACC | 1 cut(s) | 1641 |
| EcoRII | CCWGG | 5 cut(s) | 305, 433, 549, 967, 1737 |
| EcoT14I | CCWWGG | 2 cut(s) | 508, 1581 |
| EcoT38I | GRGCYC | 1 cut(s) | 1771 |
| ErhI | CCWWGG | 2 cut(s) | 508, 1581 |
| FaeI | CATG | 8 cut(s) | 217, 493, 729, 873, 1507, 1585, 1885, 2047 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 689, 721 |
| FaqI | GGGAC | 6 cut(s) | 83, 169, 592, 923, 1832, 1906 |
| FatI | CATG | 8 cut(s) | 213, 489, 725, 869, 1503, 1581, 1881, 2043 |
| FauI | CCCGC | 2 cut(s) | 359, 1213 |
| FauNDI | CATATG | 3 cut(s) | 821, 1312, 1910 |
| Fnu4HI | GCNGC | 4 cut(s) | 691, 1458, 1494, 1724 |
| FokI | GGATG | 6 cut(s) | 311, 410, 490, 822, 1049, 1805 |
| FriOI | GRGCYC | 1 cut(s) | 1771 |
| Fsp4HI | GCNGC | 4 cut(s) | 691, 1458, 1494, 1724 |
| GlaI | GCGC | 3 cut(s) | 145, 147, 226 |
| GluI | GCNGC | 4 cut(s) | 691, 1458, 1494, 1724 |
| GsaI | CCCAGC | 3 cut(s) | 231, 909, 1452 |
| HaeII | RGCGCY | 1 cut(s) | 228 |
| HaeIII | GGCC | 8 cut(s) | 267, 354, 513, 886, 1239, 1328, 1359, 2055 |
| HapII | CCGG | 3 cut(s) | 636, 1163, 1325 |
| HgaI | GACGC | 2 cut(s) | 6, 1943 |
| HhaI | GCGC | 3 cut(s) | 146, 148, 227 |
| Hin1II | CATG | 8 cut(s) | 217, 493, 729, 873, 1507, 1585, 1885, 2047 |
| Hin6I | GCGC | 3 cut(s) | 144, 146, 225 |
| HinP1I | GCGC | 3 cut(s) | 144, 146, 225 |
| HincII | GTYRAC | 2 cut(s) | 759, 838 |
| HindII | GTYRAC | 2 cut(s) | 759, 838 |
| HindIII | AAGCTT | 1 cut(s) | 466 |
| HinfI | GANTC | 4 cut(s) | 50, 74, 372, 722 |
| HpaII | CCGG | 3 cut(s) | 636, 1163, 1325 |
| HphI | GGTGA | 7 cut(s) | 151, 166, 1066, 1154, 1480, 1635, 1991 |
| Hpy166II | GTNNAC | 2 cut(s) | 759, 838 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 55, 128, 387, 1720, 1862 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 199, 328, 1516, 1786 |
| Hpy8I | GTNNAC | 2 cut(s) | 759, 838 |
| Hpy99I | CGWCG | 1 cut(s) | 83 |
| HpyAV | CCTTC | 6 cut(s) | 103, 542, 1124, 1345, 1924, 2067 |
| HpyCH4III | ACNGT | 7 cut(s) | 196, 322, 765, 1075, 1148, 1668, 1897 |
| HpyCH4IV | ACGT | 3 cut(s) | 566, 1211, 1429 |
| HpyCH4V | TGCA | 9 cut(s) | 168, 392, 981, 1089, 1226, 1247, 1341, 1507, 2043 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 130, 510, 1107, 1454, 1670, 1710, 1729, 1871, 2012 |
| HpyF3I | CTNAG | 7 cut(s) | 125, 247, 844, 1540, 1717, 1787, 1803 |
| HpySE526I | ACGT | 3 cut(s) | 566, 1211, 1429 |
| Hsp92II | CATG | 8 cut(s) | 217, 493, 729, 873, 1507, 1585, 1885, 2047 |
| HspAI | GCGC | 3 cut(s) | 144, 146, 225 |
| KflI | GGGWCCC | 1 cut(s) | 156 |
| Kzo9I | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| LmnI | GCTCC | 9 cut(s) | 301, 687, 830, 1165, 1327, 1603, 1766, 1862, 1915 |
| Lsp1109I | GCAGC | 4 cut(s) | 677, 1469, 1505, 1710 |
| LweI | GCATC | 3 cut(s) | 177, 800, 1713 |
| MaeII | ACGT | 3 cut(s) | 566, 1211, 1429 |
| MaeIII | GTNAC | 5 cut(s) | 347, 1142, 1156, 1641, 1795 |
| MalI | GATC | 6 cut(s) | 62, 119, 927, 973, 1500, 2009 |
| MboI | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| MboII | GAAGA | 6 cut(s) | 154, 235, 461, 1069, 1193, 1396 |
| MflI | RGATCY | 2 cut(s) | 925, 971 |
| MhlI | GDGCHC | 2 cut(s) | 655, 1771 |
| MlsI | TGGCCA | 1 cut(s) | 886 |
| MluCI | AATT | 7 cut(s) | 278, 681, 1048, 1372, 1395, 1817, 1995 |
| MluNI | TGGCCA | 1 cut(s) | 886 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 3 cut(s) | 787, 821, 1405 |
| Mox20I | TGGCCA | 1 cut(s) | 886 |
| MscI | TGGCCA | 1 cut(s) | 886 |
| MslI | CAYNNNNRTG | 2 cut(s) | 590, 1880 |
| Msp20I | TGGCCA | 1 cut(s) | 886 |
| MspA1I | CMGCKG | 2 cut(s) | 923, 1496 |
| MspI | CCGG | 3 cut(s) | 636, 1163, 1325 |
| MspR9I | CCNGG | 6 cut(s) | 307, 435, 551, 637, 969, 1739 |
| MvaI | CCWGG | 5 cut(s) | 307, 435, 551, 969, 1739 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 130, 510, 1107, 1454, 1670, 1710, 1729, 1871, 2012 |
| NciI | CCSGG | 1 cut(s) | 637 |
| NcoI | CCATGG | 1 cut(s) | 1581 |
| NdeI | CATATG | 3 cut(s) | 821, 1312, 1910 |
| NdeII | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| NlaIII | CATG | 8 cut(s) | 217, 493, 729, 873, 1507, 1585, 1885, 2047 |
| NlaIV | GGNNCC | 3 cut(s) | 157, 158, 379 |
| NmuCI | GTSAC | 3 cut(s) | 1142, 1641, 1795 |
| NspI | RCATGY | 2 cut(s) | 1885, 2047 |
| PauI | GCGCGC | 1 cut(s) | 144 |
| PciI | ACATGT | 1 cut(s) | 1881 |
| PfeI | GAWTC | 3 cut(s) | 50, 372, 722 |
| PflFI | GACNNNGTC | 2 cut(s) | 16, 95 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1570 |
| PfoI | TCCNGGA | 1 cut(s) | 549 |
| PkrI | GCNGC | 4 cut(s) | 692, 1459, 1495, 1725 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| Ppu21I | YACGTR | 1 cut(s) | 567 |
| PpuMI | RGGWCCY | 1 cut(s) | 156 |
| PscI | ACATGT | 1 cut(s) | 1881 |
| PshAI | GACNNNNGTC | 1 cut(s) | 792 |
| PshBI | ATTAAT | 1 cut(s) | 890 |
| Psp124BI | GAGCTC | 1 cut(s) | 1771 |
| Psp5II | RGGWCCY | 1 cut(s) | 156 |
| Psp6I | CCWGG | 5 cut(s) | 305, 433, 549, 967, 1737 |
| PspEI | GGTNACC | 1 cut(s) | 1641 |
| PspFI | CCCAGC | 3 cut(s) | 227, 905, 1448 |
| PspGI | CCWGG | 5 cut(s) | 305, 433, 549, 967, 1737 |
| PspN4I | GGNNCC | 3 cut(s) | 157, 158, 379 |
| PspPI | GGNCC | 7 cut(s) | 112, 156, 547, 1237, 1327, 1652, 2054 |
| PspPPI | RGGWCCY | 1 cut(s) | 156 |
| PsuI | RGATCY | 2 cut(s) | 925, 971 |
| PsyI | GACNNNGTC | 2 cut(s) | 16, 95 |
| PteI | GCGCGC | 1 cut(s) | 144 |
| PvuII | CAGCTG | 1 cut(s) | 1496 |
| RsaI | GTAC | 2 cut(s) | 1658, 2048 |
| RsaNI | GTAC | 2 cut(s) | 1657, 2047 |
| RseI | CAYNNNNRTG | 2 cut(s) | 590, 1880 |
| SacI | GAGCTC | 1 cut(s) | 1771 |
| SatI | GCNGC | 4 cut(s) | 691, 1458, 1494, 1724 |
| Sau3AI | GATC | 6 cut(s) | 60, 117, 925, 971, 1498, 2007 |
| Sau96I | GGNCC | 7 cut(s) | 112, 156, 547, 1237, 1327, 1652, 2054 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 6 cut(s) | 307, 435, 551, 637, 969, 1739 |
| SduI | GDGCHC | 2 cut(s) | 655, 1771 |
| SfaNI | GCATC | 3 cut(s) | 177, 800, 1713 |
| SfcI | CTRYAG | 2 cut(s) | 1152, 1254 |
| SinI | GGWCC | 4 cut(s) | 112, 156, 547, 1652 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 590, 1880 |
| SmlI | CTYRAG | 1 cut(s) | 71 |
| SmoI | CTYRAG | 1 cut(s) | 71 |
| SpeI | ACTAGT | 1 cut(s) | 1420 |
| Sse9I | AATT | 7 cut(s) | 278, 681, 1048, 1372, 1395, 1817, 1995 |
| SsiI | CCGC | 6 cut(s) | 366, 729, 813, 923, 1220, 1491 |
| SspI | AATATT | 1 cut(s) | 1680 |
| SstI | GAGCTC | 1 cut(s) | 1771 |
| StyD4I | CCNGG | 6 cut(s) | 305, 433, 549, 635, 967, 1737 |
| StyI | CCWWGG | 2 cut(s) | 508, 1581 |
| TaaI | ACNGT | 7 cut(s) | 196, 322, 765, 1075, 1148, 1668, 1897 |
| TaiI | ACGT | 3 cut(s) | 569, 1214, 1432 |
| TaqI | TCGA | 3 cut(s) | 81, 1707, 1878 |
| TaqII | GACCGA | 1 cut(s) | 23 |
| TasI | AATT | 7 cut(s) | 278, 681, 1048, 1372, 1395, 1817, 1995 |
| TatI | WGTACW | 1 cut(s) | 2046 |
| TfiI | GAWTC | 3 cut(s) | 50, 372, 722 |
| TscAI | CASTG | 5 cut(s) | 580, 625, 768, 1360, 1902 |
| TseFI | GTSAC | 3 cut(s) | 1142, 1641, 1795 |
| TseI | GCWGC | 4 cut(s) | 690, 1457, 1493, 1723 |
| Tsp45I | GTSAC | 3 cut(s) | 1142, 1641, 1795 |
| TspDTI | ATGAA | 6 cut(s) | 230, 478, 714, 1005, 1396, 1897 |
| TspGWI | ACGGA | 4 cut(s) | 10, 67, 198, 1644 |
| TspRI | CASTG | 5 cut(s) | 580, 625, 768, 1360, 1902 |
| Tth111I | GACNNNGTC | 2 cut(s) | 16, 95 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1570 |
| VpaK11BI | GGWCC | 4 cut(s) | 112, 156, 547, 1652 |
| VspI | ATTAAT | 1 cut(s) | 890 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 304, 536 |
| XapI | RAATTY | 1 cut(s) | 1372 |
| XceI | RCATGY | 2 cut(s) | 1885, 2047 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 471, 1287, 1608, 1735 |