Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000961

Physical Location & Seq

Genomic Coordinates Forward (+)

13333792 .. 13338027

Gene Structure 4236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATCAAAAGAATTCAGCTTCATCTTCAGATGGTGCAGATGAGGAATTTTGTGATCTTACCAATTCATCATCAGACGAAGACTTGATGAATCTGCAGATTGAAGCTCTACAAGAGAAGGGGAGAAGAAGACGACGGGGCTCAATTCCTGGTCACAAGCTGAATTTGACGGTGGGGATCATCCCGTCCTTGAATGTGGCAGCCGGTCTGCTCGGGTTCTTCTTCGTCAAGTCCTGGATCGGGTTCTTGGCCCAATTTGGGTTTCAGGTGAAGCCCTTCACCAGGCAAGAGAACACTGTCATCCAAACTTGCGTCGTCGCTTGCTATAGCCTCGCCTTTAGCTGGGGATTCGGTTCGTATTTGGTTGCAATGGATGAGAGAACATATAAACTCATCGGGGAGGATTACCCTGGTAACAGGGTAGAAGATGTTATTAATCCGAGCTTGTGGTGGATGACTGGTTTCCTGGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCTGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAATGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGAATTGACACTTTTTAAGAACACTTTTATGATTTTGTGTTGTTTTCTGTTGTGCAGACTGATAAATGCTACTTGTTTTCTTTTACTTTCTCTGTGTTTCGCTCCGGCAGAGTTATGCTGTTCTTGGCTGGTCTCCACGGGCAAAAAAGAGACCAGTCTCTTCCTGACCCAGGTCACTCACCAAGTCAGTTTCCTGACTCAGTCGATTAAGCTACGTATTTCATTAGCACGGCGAGCTCTACAAGTACATCAAACTCAACCACCATGGTTATTAGTTGCTAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

338

Amino Acids

38.0

Weight (kDa)

8.52

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	53 - 242	1.3e-37	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27020 AT5G41000 AT5G41000 AT5G41000
fragaria_vesca	FvH4_6g53820
malus_domestica	MD09G1008400.v1.1 MD17G1002400.v1.1
prunus_persica	Prupe.3G197700_v2.0.a1 Prupe.3G308600_v2.0.a1
pyrus_communis	pycom111g00670 pycom17g00700
rosa_chinensis	RchiOBHm_Chr2g0155151 RchiOBHm_Chr2g0175951 RchiOBHm_Chr4g0387931 RchiOBHm_Chr4g0404811 RchiOBHm_Chr6g0247711 RchiOBHm_Chr6g0308411 RchiOBHm_Chr7g0225381
rosa_laevigata	RLG00000001821 RLG00000022368
rosa_multiflora	Rmu_co8150112.1_g000001 Rmu_sc0007419.1_g000008 Rmu_sc0012106.1_g000001 Rmu_sc0018801.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076910 Rroxscaffold_3G00233840 Rroxscaffold_5G00348620 Rroxscaffold_6G00388000 Rroxscaffold_7G00165420
rosa_rugosa	Rorug01G0171700 Rorug02G0588900 Rorug02G0589000 Rorug03G0332100 Rorug03G0332200 Rorug05G0042300 Rorug05G0110200 Rorug07G0229200
rosa_samantha	Rh1AG155500 Rh1CG145800 Rh2AG668100 Rh2BG679600 Rh2CG642400 Rh2DG572100 Rh2DG693100 Rh4AG072500 Rh4AG074300 Rh4BG070600 Rh4CG078900 Rh4DG161200 Rh5AG218500 Rh5BG431200 Rh5BG537600 Rh5CG454500 Rh5CG561600 Rh6AG476100 Rh7AG374200 Rh7BG363900 Rh7CG392400 Rh7DG375100
rosa_wichuraiana	Rw2G054770 Rw3G025300 Rw4G006410 Rw7G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	495
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	3 cut(s)	12, 185, 245
AcsI	RAATTY	3 cut(s)	13, 47, 163
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	1 cut(s)	975
AfiI	CCNNNNNNNGG	5 cut(s)	240, 258, 282, 342, 898
AgsI	TTSAA	4 cut(s)	104, 193, 685, 731
AjnI	CCWGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	3 cut(s)	865, 872, 890
AlwI	GGATC	3 cut(s)	12, 185, 245
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	200, 666
ApoI	RAATTY	3 cut(s)	13, 47, 163
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	271, 280, 899
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	143, 967
BbsI	GAAGAC	2 cut(s)	87, 136
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	2 cut(s)	212, 653
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	865, 872, 890
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	2 cut(s)	95, 325
BisI	GCNGC	2 cut(s)	201, 667
BlsI	GCNGC	2 cut(s)	202, 668
Bme1390I	CCNGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
BmrI	ACTGGG	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	543
BoxI	GACNNNNGTC	1 cut(s)	899
BpiI	GAAGAC	2 cut(s)	87, 136
BsaAI	YACGTR	1 cut(s)	944
BsaI	GGTCTC	2 cut(s)	865, 872
BsaJI	CCNNGG	5 cut(s)	409, 484, 864, 897, 992
Bsc4I	CCNNNNNNNGG	5 cut(s)	240, 258, 282, 342, 898
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	463, 549, 882
Bse3DI	GCAATG	3 cut(s)	375, 573, 632
BseBI	CCWGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
BseDI	CCNNGG	5 cut(s)	409, 484, 864, 897, 992
BseGI	GGATG	4 cut(s)	180, 300, 379, 459
BseLI	CCNNNNNNNGG	5 cut(s)	240, 258, 282, 342, 898
BseMI	GCAATG	3 cut(s)	375, 573, 632
BseMII	CTCAG	1 cut(s)	941
BseNI	ACTGG	3 cut(s)	463, 549, 882
BseXI	GCAGC	2 cut(s)	212, 653
BseYI	CCCAGC	1 cut(s)	342
BsgI	GTGCAG	3 cut(s)	57, 621, 802
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	967
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	204, 833
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	5 cut(s)	240, 258, 282, 342, 898
BsmAI	GTCTC	3 cut(s)	865, 872, 890
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	2 cut(s)	865, 872
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	143, 967
Bsp143I	GATC	5 cut(s)	4, 55, 177, 237, 573
Bsp19I	CCATGG	1 cut(s)	992
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	940
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	3 cut(s)	12, 185, 245
BspTNI	GGTCTC	2 cut(s)	865, 872
BsrDI	GCAATG	3 cut(s)	375, 573, 632
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	463, 549, 882
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	5 cut(s)	409, 484, 864, 897, 992
BssMI	GATC	5 cut(s)	4, 55, 177, 237, 573
BssT1I	CCWWGG	2 cut(s)	484, 992
Bst2UI	CCWGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
Bst4CI	ACNGT	2 cut(s)	172, 298
Bst6I	CTCTTC	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	322, 609, 963
BstDEI	CTNAG	2 cut(s)	644, 927
BstDSI	CCRYGG	2 cut(s)	864, 992
BstENI	CCTNNNNNAGG	2 cut(s)	280, 896
BstF5I	GGATG	4 cut(s)	180, 300, 379, 459
BstKTI	GATC	5 cut(s)	7, 58, 180, 240, 576
BstMAI	GTCTC	3 cut(s)	865, 872, 890
BstMBI	GATC	5 cut(s)	4, 55, 177, 237, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 962
BstNI	CCWGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
BstSFI	CTRYAG	2 cut(s)	95, 325
BstSNI	TACGTA	1 cut(s)	944
BstV1I	GCAGC	2 cut(s)	212, 653
BstV2I	GAAGAC	2 cut(s)	87, 136
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	864, 992
BtsCI	GGATG	4 cut(s)	180, 300, 379, 459
BtsIMutI	CAGTG	2 cut(s)	294, 556
Cac8I	GCNNGC	3 cut(s)	322, 609, 963
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	974
CviAII	CATG	3 cut(s)	649, 702, 993
CviQI	GTAC	1 cut(s)	974
DdeI	CTNAG	2 cut(s)	644, 927
DpnI	GATC	5 cut(s)	6, 57, 179, 239, 575
DpnII	GATC	5 cut(s)	4, 55, 177, 237, 573
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Ecl136II	GAGCTC	1 cut(s)	965
Eco105I	TACGTA	1 cut(s)	944
Eco130I	CCWWGG	2 cut(s)	484, 992
Eco24I	GRGCYC	2 cut(s)	143, 967
Eco31I	GGTCTC	2 cut(s)	865, 872
Eco53kI	GAGCTC	1 cut(s)	965
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	965
EcoNI	CCTNNNNNAGG	2 cut(s)	280, 896
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
EcoT14I	CCWWGG	2 cut(s)	484, 992
EcoT38I	GRGCYC	2 cut(s)	143, 967
ErhI	CCWWGG	2 cut(s)	484, 992
FaeI	CATG	3 cut(s)	652, 705, 996
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	3 cut(s)	648, 701, 992
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	201, 667
FokI	GGATG	4 cut(s)	167, 287, 386, 466
FriOI	GRGCYC	2 cut(s)	143, 967
Fsp4HI	GCNGC	2 cut(s)	201, 667
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	2 cut(s)	201, 667
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	204, 833
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	652, 705, 996
HinfI	GANTC	4 cut(s)	91, 348, 698, 925
HpaII	CCGG	2 cut(s)	204, 833
HphI	GGTGA	3 cut(s)	271, 280, 899
Hpy188I	TCNGA	3 cut(s)	31, 76, 441
Hpy188III	TCNNGA	2 cut(s)	892, 922
Hpy99I	CGWCG	3 cut(s)	138, 317, 320
HpyAV	CCTTC	2 cut(s)	112, 286
HpyCH4III	ACNGT	2 cut(s)	172, 298
HpyCH4IV	ACGT	1 cut(s)	943
HpyCH4V	TGCA	6 cut(s)	38, 97, 368, 602, 625, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 962
HpyF3I	CTNAG	2 cut(s)	644, 927
HpySE526I	ACGT	1 cut(s)	943
Hsp92II	CATG	3 cut(s)	652, 705, 996
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	5 cut(s)	4, 55, 177, 237, 573
LmnI	GCTCC	2 cut(s)	663, 835
Lsp1109I	GCAGC	2 cut(s)	212, 653
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	3 cut(s)	152, 413, 901
MalI	GATC	5 cut(s)	6, 57, 179, 239, 575
MboI	GATC	5 cut(s)	4, 55, 177, 237, 573
MboII	GAAGA	9 cut(s)	18, 92, 138, 141, 211, 214, 437, 673, 880
MhlI	GDGCHC	2 cut(s)	143, 967
MluCI	AATT	8 cut(s)	13, 47, 64, 144, 163, 254, 657, 731
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	3 cut(s)	37, 341, 394
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	5 cut(s)	435, 656, 672, 744, 936
MslI	CAYNNNNRTG	2 cut(s)	566, 755
MspI	CCGG	2 cut(s)	204, 833
MspR9I	CCNGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
MvaI	CCWGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
MwoI	GCNNNNNNNGC	2 cut(s)	608, 962
NcoI	CCATGG	1 cut(s)	992
NdeII	GATC	5 cut(s)	4, 55, 177, 237, 573
NlaIII	CATG	3 cut(s)	652, 705, 996
NmuCI	GTSAC	2 cut(s)	152, 901
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	91, 348, 698
PflFI	GACNNNGTC	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	202, 668
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
Ppu21I	YACGTR	1 cut(s)	944
PshAI	GACNNNNGTC	1 cut(s)	899
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	967
Psp6I	CCWGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	928
RsaI	GTAC	1 cut(s)	975
RsaNI	GTAC	1 cut(s)	974
RseI	CAYNNNNRTG	2 cut(s)	566, 755
SacI	GAGCTC	1 cut(s)	967
SaqAI	TTAA	5 cut(s)	435, 656, 672, 744, 936
SatI	GCNGC	2 cut(s)	201, 667
Sau3AI	GATC	5 cut(s)	4, 55, 177, 237, 573
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	7 cut(s)	150, 235, 283, 411, 467, 613, 899
SduI	GDGCHC	2 cut(s)	143, 967
SfcI	CTRYAG	2 cut(s)	95, 325
SmiMI	CAYNNNNRTG	2 cut(s)	566, 755
SnaBI	TACGTA	1 cut(s)	944
Sse9I	AATT	8 cut(s)	13, 47, 64, 144, 163, 254, 657, 731
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	723
SstI	GAGCTC	1 cut(s)	967
StyD4I	CCNGG	7 cut(s)	148, 233, 281, 409, 465, 611, 897
StyI	CCWWGG	2 cut(s)	484, 992
TaaI	ACNGT	2 cut(s)	172, 298
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	1 cut(s)	932
TasI	AATT	8 cut(s)	13, 47, 64, 144, 163, 254, 657, 731
TatI	WGTACW	1 cut(s)	973
TfiI	GAWTC	3 cut(s)	91, 348, 698
Tru1I	TTAA	5 cut(s)	435, 656, 672, 744, 936
Tru9I	TTAA	5 cut(s)	435, 656, 672, 744, 936
TscAI	CASTG	2 cut(s)	301, 556
TseFI	GTSAC	2 cut(s)	152, 901
TseI	GCWGC	2 cut(s)	200, 666
Tsp45I	GTSAC	2 cut(s)	152, 901
TspDTI	ATGAA	5 cut(s)	12, 57, 104, 690, 939
TspRI	CASTG	2 cut(s)	301, 556
Tth111I	GACNNNGTC	1 cut(s)	928
VspI	ATTAAT	1 cut(s)	435
XagI	CCTNNNNNAGG	2 cut(s)	280, 896
XapI	RAATTY	3 cut(s)	13, 47, 163
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.