pycom07g01680

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002218
Physical Location & Seq
Forward (+)
1321860 .. 1326202
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGGTAGCAGTCACCACCATCTCCAACTTCGCCACCTTTCACTCTCAGTTTCTCCCTTCACCAACCAACCCCCACCATTTCTCTTTATCCCCAAAAAACTTCACTCTCACCATCGTCACCCGCACTAACATCACCGCAACTCCCTCCCTCCGACTCACAGCCTCCCGCCTCACCCGATCCCGCCTCGCCTCCGCCGCATACGGTGGTGAACCCCCCGCAGGAGGAGGCGGAGACGGCGGAAGCGGAGGTAATGATAACGATGACAGTGATGGGAGTGGTGATGGTGATGAGGACCGGGATCGGAACAAGGCGGAGGCGGGGAGGTCGTCGGAGAGTCTGCCAAAGGACTTAGCGGCGGCCATAAAGGCCGGGCGGGTGCCGGGCTTGATTGTGAAGAGGTTCTTTGAGCTGGAGAAGTCGGCGGTGTTCAGATGGTTGCTTGGGTTTGATGGGTTCAAGGAGCGGTTGCTTGCGGACGACTTGTTCTTGACTAAAGTTGGCATCGAGTGCGGCGTTGGAATATTCACTAAGACTGCTGCAGAATTGGAGCGGCGCCGAGAAAATTTTACCAAAGAGCTGGATTTTGTTTTTGCTGATGTGGTGATGGCCATCATAGCTGATTTTATGCTTGTCTGGCTTCCCGCTCCTACTGTTTCGCTTCGACCACCTCTTGCTGTCAGCGCAGGCCGTATTGCTAAGTTCTTCTATGGGTGTCCGGATAATGCTTTCCAGGTAGCTTTGTCTGGAACATCGTACTCACTCTTACAGAGAATAGGTGCAATAGTGAGAAATGGAGCTAAACTATTTGCAGTTGGGACTGGTGCATCTCTGGTTGGTACGGGTGTAACAAATGCATTGATTAATGCACGAAAAGCTCTCGATAAATCCTTTGCTGGTGAAGCTGAGGATGTTCCCATATTATCAACCAGTGTAGCCTATGGAGTTTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCGGGAGTAATTGAACAGCGACTTCTGGAACCCTTGCTGCACCAGCACAAGCTTATACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGCAACACGTTCTTGGGTTCCTTGATGTGGGTCGATTATGCACGTTGGATTGGAATTCAAAAGATCCGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

382

Amino Acids

41.01

Weight (kDa)

8.9

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 154 - 331 4.7e-67 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 972
AccB1I GGYRCC 3 cut(s) 376, 552, 972
AccBSI CCGCTC 3 cut(s) 463, 550, 644
AccII CGCG 1 cut(s) 986
AccIII TCCGGA 1 cut(s) 715
AclWI GGATC 3 cut(s) 171, 306, 1129
AcoI YGGCCR 2 cut(s) 357, 606
AcsI RAATTY 2 cut(s) 562, 1125
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 3 cut(s) 755, 838, 974
AfiI CCNNNNNNNGG 3 cut(s) 218, 221, 1098
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 3 cut(s) 457, 998, 1130
AjnI CCWGG 1 cut(s) 729
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 8 cut(s) 409, 577, 617, 737, 797, 875, 902, 1036
AluI AGCT 8 cut(s) 409, 577, 617, 737, 797, 875, 902, 1036
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 3 cut(s) 171, 306, 1129
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 4 cut(s) 357, 366, 606, 685
ApeKI GCWGC 2 cut(s) 536, 1021
ApoI RAATTY 2 cut(s) 562, 1125
AseI ATTAAT 1 cut(s) 861
Asp700I GAANNNNTTC 1 cut(s) 398
Asp718I GGTACC 1 cut(s) 972
AspLEI GCGC 2 cut(s) 555, 683
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 3 cut(s) 296, 370, 381
AsuII TTCGAA 1 cut(s) 1066
AvaII GGWCC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BalI TGGCCA 1 cut(s) 608
BanI GGYRCC 3 cut(s) 376, 552, 972
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 523, 1008
BccI CCATC 8 cut(s) 26, 119, 263, 275, 426, 443, 598, 617
BceAI ACGGC 2 cut(s) 250, 672
BciT130I CCWGG 1 cut(s) 731
BcnI CCSGG 3 cut(s) 296, 370, 381
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 960
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 556
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 7 cut(s) 195, 354, 357, 511, 537, 551, 1022
BlsI GCNGC 7 cut(s) 196, 355, 358, 512, 538, 552, 1023
Bme1390I CCNGG 4 cut(s) 296, 370, 381, 731
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 5 cut(s) 378, 554, 974, 1014, 1090
BmrFI CCNGG 4 cut(s) 296, 370, 381, 731
BmsI GCATC 2 cut(s) 510, 833
BpmI CTGGAG 1 cut(s) 431
Bpu10I CCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 1066
BpuMI CCSGG 3 cut(s) 296, 370, 381
BsaBI GATNNNNATC 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 553
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 221, 1098
Bse1I ACTGG 3 cut(s) 823, 927, 1075
Bse8I GATNNNNATC 1 cut(s) 608
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 1 cut(s) 913
BseJI GATNNNNATC 1 cut(s) 608
BseLI CCNNNNNNNGG 3 cut(s) 218, 221, 1098
BseMII CTCAG 3 cut(s) 59, 894, 1034
BseNI ACTGG 3 cut(s) 823, 927, 1075
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 523, 1008
BsgI GTGCAG 1 cut(s) 1007
Bsh1236I CGCG 1 cut(s) 986
BshFI GGCC 4 cut(s) 359, 368, 608, 687
BshNI GGYRCC 3 cut(s) 376, 552, 972
BsiSI CCGG 4 cut(s) 295, 369, 380, 716
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 3 cut(s) 218, 221, 1098
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 829
BsnI GGCC 4 cut(s) 359, 368, 608, 687
Bsp119I TTCGAA 1 cut(s) 1066
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 3 cut(s) 176, 298, 1134
BspANI GGCC 4 cut(s) 359, 368, 608, 687
BspCNI CTCAG 3 cut(s) 58, 895, 1035
BspEI TCCGGA 1 cut(s) 715
BspFNI CGCG 1 cut(s) 986
BspLI GGNNCC 5 cut(s) 378, 554, 974, 1014, 1090
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 171, 306, 1129
BspT104I TTCGAA 1 cut(s) 1066
BspT107I GGYRCC 3 cut(s) 376, 552, 972
BsrBI CCGCTC 3 cut(s) 463, 550, 644
BsrI ACTGG 3 cut(s) 823, 927, 1075
BssMI GATC 3 cut(s) 176, 298, 1134
BssNI GRCGYC 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 3 cut(s) 203, 266, 652
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 471, 685
BstDEI CTNAG 7 cut(s) 45, 349, 528, 696, 903, 968, 1043
BstF5I GGATG 1 cut(s) 913
BstFNI CGCG 1 cut(s) 986
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 2 cut(s) 555, 683
BstKTI GATC 3 cut(s) 179, 301, 1137
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 176, 298, 1134
BstNI CCWGG 1 cut(s) 731
BstSCI CCNGG 4 cut(s) 294, 368, 379, 729
BstSFI CTRYAG 1 cut(s) 537
BstUI CGCG 1 cut(s) 986
BstV1I GCAGC 2 cut(s) 523, 1008
BstX2I RGATCY 1 cut(s) 1134
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 1 cut(s) 1134
BsuRI GGCC 4 cut(s) 359, 368, 608, 687
BtsCI GGATG 1 cut(s) 913
BtsIMutI CAGTG 2 cut(s) 271, 934
Cac8I GCNNGC 2 cut(s) 471, 685
CfoI GCGC 2 cut(s) 555, 683
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 3 cut(s) 754, 837, 973
CviQI GTAC 3 cut(s) 754, 837, 973
DdeI CTNAG 7 cut(s) 45, 349, 528, 696, 903, 968, 1043
DinI GGCGCC 1 cut(s) 554
DpnI GATC 3 cut(s) 178, 300, 1136
DpnII GATC 3 cut(s) 176, 298, 1134
EaeI YGGCCR 2 cut(s) 357, 606
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 4 cut(s) 181, 243, 252, 326
Eco47I GGWCC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 1125
EcoRII CCWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 856
EgeI GGCGCC 1 cut(s) 554
EheI GGCGCC 1 cut(s) 554
Esp3I CGTCTC 1 cut(s) 225
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 829
FauI CCCGC 8 cut(s) 128, 173, 188, 223, 310, 366, 649, 979
Fnu4HI GCNGC 7 cut(s) 195, 354, 357, 511, 537, 551, 1022
FokI GGATG 1 cut(s) 920
Fsp4HI GCNGC 7 cut(s) 195, 354, 357, 511, 537, 551, 1022
FspBI CTAG 1 cut(s) 960
GlaI GCGC 2 cut(s) 554, 682
GluI GCNGC 7 cut(s) 195, 354, 357, 511, 537, 551, 1022
GsuI CTGGAG 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 4 cut(s) 359, 368, 608, 687
HapII CCGG 4 cut(s) 295, 369, 380, 716
HhaI GCGC 2 cut(s) 555, 683
Hin1I GRCGYC 1 cut(s) 553
Hin6I GCGC 2 cut(s) 553, 681
HinP1I GCGC 2 cut(s) 553, 681
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 2 cut(s) 153, 334
HpaII CCGG 4 cut(s) 295, 369, 380, 716
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 5 cut(s) 152, 303, 331, 431, 1139
Hpy188III TCNNGA 5 cut(s) 487, 716, 744, 878, 1010
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 3 cut(s) 203, 266, 652
HpyCH4IV ACGT 2 cut(s) 1079, 1114
HpyCH4V TGCA 9 cut(s) 539, 779, 809, 824, 854, 866, 1024, 1049, 1112
HpyF3I CTNAG 7 cut(s) 45, 349, 528, 696, 903, 968, 1043
HpySE526I ACGT 2 cut(s) 1079, 1114
Hsp92I GRCGYC 1 cut(s) 553
HspAI GCGC 2 cut(s) 553, 681
KasI GGCGCC 1 cut(s) 552
Kpn2I TCCGGA 1 cut(s) 715
KpnI GGTACC 1 cut(s) 976
Kzo9I GATC 3 cut(s) 176, 298, 1134
LmnI GCTCC 4 cut(s) 460, 547, 649, 794
Lsp1109I GCAGC 2 cut(s) 523, 1008
LweI GCATC 2 cut(s) 510, 833
MaeI CTAG 1 cut(s) 960
MaeII ACGT 2 cut(s) 1079, 1114
MaeIII GTNAC 3 cut(s) 10, 115, 844
MalI GATC 3 cut(s) 178, 300, 1136
MbiI CCGCTC 3 cut(s) 463, 550, 644
MboI GATC 3 cut(s) 176, 298, 1134
MboII GAAGA 2 cut(s) 406, 694
MflI RGATCY 1 cut(s) 1134
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 5 cut(s) 542, 562, 993, 1050, 1125
MluNI TGGCCA 1 cut(s) 608
Mly113I GGCGCC 1 cut(s) 553
MlyI GAGTC 2 cut(s) 147, 343
MmeI TCCRAC 5 cut(s) 48, 175, 309, 496, 1097
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 856
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 608
MseI TTAA 1 cut(s) 861
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 4 cut(s) 295, 369, 380, 716
MspR9I CCNGG 4 cut(s) 296, 370, 381, 731
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 1 cut(s) 986
NarI GGCGCC 1 cut(s) 553
NciI CCSGG 3 cut(s) 296, 370, 381
NdeII GATC 3 cut(s) 176, 298, 1134
NlaIV GGNNCC 5 cut(s) 378, 554, 974, 1014, 1090
NmeAIII GCCGAG 1 cut(s) 581
NmuCI GTSAC 2 cut(s) 10, 115
NsiI ATGCAT 1 cut(s) 856
NspV TTCGAA 1 cut(s) 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 398
PkrI GCNGC 7 cut(s) 196, 355, 358, 512, 538, 552, 1023
PleI GAGTC 2 cut(s) 147, 342
PluTI GGCGCC 1 cut(s) 556
PpsI GAGTC 2 cut(s) 147, 342
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 5 cut(s) 378, 554, 974, 1014, 1090
PspPI GGNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 1134
RsaI GTAC 3 cut(s) 755, 838, 974
RsaNI GTAC 3 cut(s) 754, 837, 973
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 7 cut(s) 195, 354, 357, 511, 537, 551, 1022
Sau3AI GATC 3 cut(s) 176, 298, 1134
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 2 cut(s) 147, 343
ScrFI CCNGG 4 cut(s) 296, 370, 381, 731
SfaNI GCATC 2 cut(s) 510, 833
SfcI CTRYAG 1 cut(s) 537
SfiI GGCCNNNNNGGCC 1 cut(s) 365
SfoI GGCGCC 1 cut(s) 554
SfuI TTCGAA 1 cut(s) 1066
SinI GGWCC 1 cut(s) 292
Sse9I AATT 5 cut(s) 542, 562, 993, 1050, 1125
SspDI GGCGCC 1 cut(s) 552
SspI AATATT 1 cut(s) 522
SspMI CTAG 1 cut(s) 960
StyD4I CCNGG 4 cut(s) 294, 368, 379, 729
TaaI ACNGT 3 cut(s) 203, 266, 652
TaiI ACGT 2 cut(s) 1082, 1117
TaqI TCGA 5 cut(s) 504, 661, 879, 1066, 1104
TasI AATT 5 cut(s) 542, 562, 993, 1050, 1125
TauI GCSGC 5 cut(s) 197, 356, 359, 513, 553
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 2 cut(s) 271, 934
TseFI GTSAC 2 cut(s) 10, 115
TseI GCWGC 2 cut(s) 536, 1021
Tsp45I GTSAC 2 cut(s) 10, 115
TspRI CASTG 2 cut(s) 271, 934
VpaK11BI GGWCC 1 cut(s) 292
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 2 cut(s) 562, 1125
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 960
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.