pycom10g05310

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000457
Physical Location & Seq
Forward (+)
5648698 .. 5649180
483 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGGCCTCATCATCAGCGGACTTGAAAAAGAAGATAACTCTAAAGAGCTCCGACGACGAGATGTTCGAGGTGGAACAGGCGGTGGCCATGGAGTCGCAGACCATCAAGCACATGGTGGAGGACGGATGTGCCGGCAATGCCATTCCTTTGCCAAATGTGACGAGCGCCATCCTTGCGAAGGTCATTGAGTACTGCAGGAAGCATCGTGAAGATGAGGGGGCTACTGCTGCTGACGGCGAGAAAAATGTCAAGAAGTGGGATGCCGAGTTCATGAAGATCGACCATAACACTCTCTATGACCTAATAATGGCGGCAAACTATCTCGACATCAAGGGCCTGCTTGACCTGACGTGTCAGACTGTGGCGGACATGATCAAGGGGAAGACACCTGAACAGATTCGCACGACCTTCAACATCAAGAACGATTTCACTCCCGAGGAAGAAGAAAAGATTCGTAGGGAGAACCAGTGGGCTTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

4.92

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 10 - 69 2.8e-29 Skp1 family, tetramerisation domain
Skp1 PF01466 111 - 158 3.5e-31 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20140 AT1G75950 AT2G25700 AT4G34210 AT4G34470
fragaria_vesca FvH4_2g01630 FvH4_2g20440 FvH4_5g22600 FvH4_5g30320 FvH4_5g34420
malus_domestica MD02G1304800.v1.1 MD05G1122400.v1.1 MD10G1067100.v1.1 MD10G1067200.v1.1 MD10G1125000.v1.1
prunus_persica Prupe.8G166100_v2.0.a1
pyrus_communis pycom05g11640 pycom10g05300 pycom10g05310
rosa_chinensis RchiOBHm_Chr6g0244051 RchiOBHm_Chr6g0244371 RchiOBHm_Chr6g0244391 RchiOBHm_Chr6g0244461 RchiOBHm_Chr6g0244471 RchiOBHm_Chr6g0252401 RchiOBHm_Chr6g0286541 RchiOBHm_Chr7g0210421 RchiOBHm_Chr7g0224691
rosa_laevigata RLG00000001864 RLG00000001866 RLG00000003042 RLG00000012559 RLG00000015355 RLG00000015357 RLG00000015359 RLG00000015360 RLG00000015363 RLG00000015365 RLG00000015387
rosa_multiflora Rmu_co8353759.1_g000001 Rmu_sc0000144.1_g000032 Rmu_sc0000633.1_g000003 Rmu_sc0000633.1_g000009 Rmu_sc0000633.1_g000016 Rmu_sc0000633.1_g000017 Rmu_sc0001719.1_g000014 Rmu_sc0003807.1_g000008 Rmu_sc0004628.1_g000012 Rmu_sc0006711.1_g000003 Rmu_sc0006898.1_g000003
rosa_roxburghii Rroxscaffold_3G00234480 Rroxscaffold_3G00248340 Rroxscaffold_7G00182200 Rroxscaffold_7G00216120
rosa_rugosa Rorug05G0506900.1 Rorug05G0509000 Rorug05G0509100 Rorug06G0180900 Rorug07G0121500 Rorug07G0224900
rosa_samantha Rh6AG021400 Rh6AG023400 Rh6AG024200 Rh6AG024400 Rh6AG293700 Rh6CG013800 Rh6CG016200 Rh6CG016300 Rh6CG016600 Rh6CG017000 Rh6CG297300 Rh6DG015000 Rh6DG017300 Rh6DG017700 Rh6DG018000 Rh6DG289200 Rh7BG249100 Rh7BG249400 Rh7BG360900 Rh7CG271000 Rh7CG396900 Rh7DG261700 Rh7DG371100
rosa_wichuraiana Rw6G001760 Rw6G001920 Rw6G001960 Rw6G001970 Rw6G025280 Rw7G021670 Rw7G031310 Rw7G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 17, 80, 311, 365
AcoI YGGCCR 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 178, 307
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 2 cut(s) 25, 412
AjiI CACGTC 1 cut(s) 351
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 3 cut(s) 3, 84, 334
ApeKI GCWGC 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp700I GAANNNNTTC 3 cut(s) 396, 425, 450
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 434
BalI TGGCCA 1 cut(s) 86
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 110, 176
BceAI ACGGC 1 cut(s) 250
BclI TGATCA 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 2 cut(s) 228, 312
BlsI GCNGC 2 cut(s) 229, 313
BmcAI AGTACT 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 334
BmsI GCATC 2 cut(s) 211, 250
BpiI GAAGAC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 87, 435
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 307
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 87, 435
BseGI GGATG 3 cut(s) 131, 168, 265
BseLI CCNNNNNNNGG 2 cut(s) 178, 307
BseMI GCAATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 3 cut(s) 5, 86, 336
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 178, 307
BsnI GGCC 3 cut(s) 5, 86, 336
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 276, 372
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 4 cut(s) 17, 80, 311, 365
BspANI GGCC 3 cut(s) 5, 86, 336
BspHI TCATGA 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 87, 435
BssMI GATC 2 cut(s) 276, 372
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 133, 338
BstDSI CCRYGG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 131, 168, 265
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 2 cut(s) 279, 375
BstMBI GATC 2 cut(s) 276, 372
BstMWI GCNNNNNNNGC 3 cut(s) 137, 173, 227
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 389
BsuRI GGCC 3 cut(s) 5, 86, 336
BtgI CCRYGG 1 cut(s) 87
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 131, 168, 265
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 2 cut(s) 133, 338
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 88, 112, 271, 370
CviJI RGCY 6 cut(s) 5, 48, 86, 221, 336, 473
CviKI_1 RGCY 6 cut(s) 5, 48, 86, 221, 336, 473
CviQI GTAC 1 cut(s) 190
DpnI GATC 2 cut(s) 278, 374
DpnII GATC 2 cut(s) 276, 372
DraIII CACNNNGTG 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 84
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 4 cut(s) 91, 115, 274, 373
FaiI YATR 6 cut(s) 89, 113, 272, 285, 297, 371
FatI CATG 4 cut(s) 87, 111, 270, 369
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 228, 312
FokI GGATG 3 cut(s) 138, 155, 272
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 228, 312
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 228, 312
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 3 cut(s) 5, 86, 336
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 91, 115, 274, 373
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 3 cut(s) 92, 397, 451
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 52, 357
Hpy188III TCNNGA 6 cut(s) 206, 250, 271, 323, 418, 434
Hpy99I CGWCG 2 cut(s) 56, 59
HpyAV CCTTC 2 cut(s) 172, 418
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 173, 227
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 4 cut(s) 91, 115, 274, 373
HspAI GCGC 1 cut(s) 165
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 276, 372
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 7 cut(s) 62, 145, 181, 350, 359, 402, 479
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 2 cut(s) 211, 250
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 278, 374
MboI GATC 2 cut(s) 276, 372
MboII GAAGA 6 cut(s) 43, 221, 286, 394, 452, 455
MhlI GDGCHC 1 cut(s) 50
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 16, 61, 112, 208, 430
Mox20I TGGCCA 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 3 cut(s) 396, 425, 450
MscI TGGCCA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 137, 173, 227
NaeI GCCGGC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 276, 372
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 91, 115, 274, 373
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 157
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 3 cut(s) 396, 425, 450
PfeI GAWTC 2 cut(s) 397, 451
PkrI GCNGC 2 cut(s) 229, 313
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 334
PstI CTGCAG 1 cut(s) 197
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 50
SatI GCNGC 2 cut(s) 228, 312
Sau3AI GATC 2 cut(s) 276, 372
Sau96I GGNCC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 50
SetI ASST 8 cut(s) 50, 72, 183, 303, 348, 353, 391, 410
SfaNI GCATC 2 cut(s) 211, 250
SfcI CTRYAG 1 cut(s) 193
SsiI CCGC 4 cut(s) 17, 80, 311, 365
SstI GAGCTC 1 cut(s) 50
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 353
TaqI TCGA 4 cut(s) 66, 279, 324, 477
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 2 cut(s) 397, 451
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 259, 287
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 473
XagI CCTNNNNNAGG 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmnI GAANNNNTTC 3 cut(s) 396, 425, 450
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.