Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

17395600 .. 17396537

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACTTTGAGGTTACAATTTGTCCGGATGAAGGATATTACAAAGGCGGTGTGTTTTTGTTTACGTTCCAAGTTGCCCCTATCTATCCACATGAAGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCGAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTATCATTTATGGACTATATCATCTCTTCACGGAACCAAATTATGAAGATCCACTAAATCATGATGCAGCTGCAGTGTTGAGAGACAACCCGAAGTTGTTTGAATCTAATGTAAGAAGGGCCATGGCCGGTGGGTATGTGGGGCAAACCTTGTTCCCCCGGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

6.05

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	1 - 110	1.1e-37	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	2 cut(s)	327, 333
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	275, 278
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	265, 287
BccI	CCATC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	120, 330, 365
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	120, 330, 365
BseGI	GGATG	3 cut(s)	34, 130, 168
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	265, 287
BshFI	GGCC	2 cut(s)	329, 335
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	26, 336, 367
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	329, 335
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	329, 335
BspEI	TCCGGA	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	120, 330, 365
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	120, 330
Bst6I	CTCTTC	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	34, 130, 168
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	265, 287
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	329, 335
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	34, 130, 168
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	327
CviAII	CATG	3 cut(s)	92, 269, 331
CviJI	RGCY	3 cut(s)	278, 329, 335
CviKI_1	RGCY	3 cut(s)	278, 329, 335
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	120, 330
EcoT14I	CCWWGG	2 cut(s)	120, 330
ErhI	CCWWGG	2 cut(s)	120, 330
FaeI	CATG	3 cut(s)	95, 272, 334
FaiI	YATR	9 cut(s)	93, 203, 219, 226, 252, 270, 332, 345, 376
FatI	CATG	3 cut(s)	91, 268, 330
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	3 cut(s)	41, 117, 155
Fsp4HI	GCNGC	2 cut(s)	276, 279
GluI	GCNGC	2 cut(s)	276, 279
HaeIII	GGCC	2 cut(s)	329, 335
HapII	CCGG	3 cut(s)	26, 336, 367
Hin1II	CATG	3 cut(s)	95, 272, 334
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	3 cut(s)	26, 336, 367
Hpy166II	GTNNAC	3 cut(s)	63, 127, 372
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	26, 269
Hpy8I	GTNNAC	3 cut(s)	63, 127, 372
HpyAV	CCTTC	3 cut(s)	26, 143, 318
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	275, 281, 372
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	95, 272, 334
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	39, 204, 349
Lsp1109I	GCAGC	2 cut(s)	265, 287
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	191, 226, 266
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	18, 247
MnlI	CCTC	2 cut(s)	4, 173
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	26, 336, 367
MspR9I	CCNGG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	95, 272, 334
NlaIV	GGNNCC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	277, 280
PshAI	GACNNNNGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	6 cut(s)	15, 68, 126, 193, 280, 359
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	18, 247
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	2 cut(s)	120, 330
TaiI	ACGT	1 cut(s)	68
TasI	AATT	2 cut(s)	18, 247
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	2 cut(s)	275, 278
TspDTI	ATGAA	4 cut(s)	17, 45, 108, 267
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.