pycom17g06630

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001665
Physical Location & Seq
Forward (+)
4816722 .. 4818367
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGTCTTGGTTTCTTACAGTTATCTTTCTGGTTGCTACTCTCACATTTCATACTCCTTCAGAGGCTAGCCAAGAGAAGAACCATCCTTCTGCAGTTGTTGTGGGCACTGTCTACTGTGACACATGTTTCCAAGAGGATTTCTCACATACCAGCCATTTCATTTCAGGGGCTTCCGTTGGTGTGGAATGCAAAGATGGGAGTTCAACGGAACAAAGTTTCAAGGCACAAGTGAAAACAAATAGCCATGGACAATTCAAAGTCCTTCTGCCATTCTCGGTGAGCAAACATGTCAAGAAAATTGAAGGATGCTCAGTGAAACTAATCAGCAGCAGTGAACCCTACTGTGCTGTGGCCTCATCAGCTACCTCCTCTTCCTTACACCTCAAGGCAAGAAAGCAAGGGACTCATATATTCTCTGCTGGTTTCTTCACCTTCAAGCCTCTCAAACAACCCACCTTATGCAACCAGAAACCCAGCATTCAGAATTCCAAGAAATTAAATTCCCAGAAGTTCCCCTCTCAAGTGGACCCCACAATTCCTGATCTACCTCCCGTCCCTAAGATCCCTATTGTTCCACCACTGCCACAACTCCCTCCTCTCCCTCCCATCCCAATTGGTGTCCCAGGACTCCCAGGACTTCCTGGAATTCCAGGTTCGCCCCCTGTTGCTGTAAAAACTTCATCTGTGTCCTCCAACTCCAAAACTTCAAAGAAAGAGCAACTAGGTGATAATAAAGAAGTAGCGCATCCAGATACTATATTTCCACCTTTATTTCCACCAATTATCCCTAATCCATTACAGCCCCCTCCACTTATCCCTAATCCACTTCAGCCCCCACCAGCTCCATTAATCCCTAATTTGCCCCCTCTTCCTGGTTCTCCACCAGCAGGTCCAGCACCATTGATTCCCAACCTGCCGATTCCCAACCTGCCGATTCCCAACATGCCAATTCCCAACCTGCCACCTATACCTGGTTTGACTCCATCGCCGTCACCACCACCACCAATCATCCCATTCCTCCCTCCACTCCCCATCCCACTCCCACCTGTGCCTCGGATCCCCGGAATTCCCCCAGCATCTTCTTCAAAACAAAGTACTTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

369

Amino Acids

38.82

Weight (kDa)

9.36

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 33 - 122 7.8e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 878, 921, 936, 966
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 3 cut(s) 556, 1051, 1064
AcsI RAATTY 4 cut(s) 484, 499, 645, 1065
AcuI CTGAAG 2 cut(s) 42, 812
AfaI GTAC 1 cut(s) 1096
AfiI CCNNNNNNNGG 3 cut(s) 872, 887, 971
AflIII ACRYGT 2 cut(s) 122, 286
AgsI TTSAA 7 cut(s) 204, 220, 256, 302, 436, 708, 1086
AjnI CCWGG 6 cut(s) 622, 631, 640, 649, 871, 970
AluBI AGCT 2 cut(s) 362, 842
AluI AGCT 2 cut(s) 362, 842
AlwI GGATC 3 cut(s) 556, 1051, 1064
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 4 cut(s) 484, 499, 645, 1065
AseI ATTAAT 1 cut(s) 848
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 526, 890
AsuC2I CCSGG 1 cut(s) 1062
AsuHPI GGTGA 5 cut(s) 289, 421, 737, 984, 1092
AsuNHI GCTAGC 1 cut(s) 65
AvaII GGWCC 2 cut(s) 526, 890
BaeGI GKGCMC 1 cut(s) 107
BamHI GGATCC 1 cut(s) 1056
BbvI GCAGC 1 cut(s) 339
BccI CCATC 5 cut(s) 90, 188, 614, 991, 1040
BceAI ACGGC 1 cut(s) 973
BciT130I CCWGG 6 cut(s) 624, 633, 642, 651, 873, 972
BcnI CCSGG 1 cut(s) 1062
BfaI CTAG 2 cut(s) 66, 722
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 4 cut(s) 878, 921, 936, 966
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
BmcAI AGTACT 1 cut(s) 1096
Bme1390I CCNGG 7 cut(s) 624, 633, 642, 651, 873, 972, 1062
Bme18I GGWCC 2 cut(s) 526, 890
BmgT120I GGNCC 2 cut(s) 526, 890
BmiI GGNNCC 2 cut(s) 528, 1058
BmrFI CCNGG 7 cut(s) 624, 633, 642, 651, 873, 972, 1062
BmsI GCATC 3 cut(s) 296, 754, 1085
BmtI GCTAGC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 2 cut(s) 368, 504
BpuMI CCSGG 1 cut(s) 1062
BsaJI CCNNGG 5 cut(s) 244, 622, 631, 1052, 1060
Bsc4I CCNNNNNNNGG 3 cut(s) 872, 887, 971
BseBI CCWGG 6 cut(s) 624, 633, 642, 651, 873, 972
BseDI CCNNGG 5 cut(s) 244, 622, 631, 1052, 1060
BseGI GGATG 6 cut(s) 82, 311, 606, 745, 1008, 1032
BseLI CCNNNNNNNGG 3 cut(s) 872, 887, 971
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 358, 585
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 2 cut(s) 473, 1072
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 1062
BslFI GGGAC 3 cut(s) 415, 539, 605
BslI CCNNNNNNNGG 3 cut(s) 872, 887, 971
BsmFI GGGAC 3 cut(s) 415, 539, 605
BsmI GAATGC 2 cut(s) 191, 477
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 541, 561, 1056
Bsp19I CCATGG 1 cut(s) 244
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 528, 1058
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 4 cut(s) 878, 921, 936, 966
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 3 cut(s) 556, 1051, 1064
BssECI CCNNGG 5 cut(s) 244, 622, 631, 1052, 1060
BssMI GATC 3 cut(s) 541, 561, 1056
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 6 cut(s) 624, 633, 642, 651, 873, 972
Bst4CI ACNGT 4 cut(s) 19, 109, 116, 344
Bst6I CTCTTC 2 cut(s) 376, 873
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 310, 558
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 6 cut(s) 82, 311, 606, 745, 1008, 1032
BstHHI GCGC 1 cut(s) 745
BstKTI GATC 3 cut(s) 544, 564, 1059
BstMBI GATC 3 cut(s) 541, 561, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 359, 893
BstNI CCWGG 6 cut(s) 624, 633, 642, 651, 873, 972
BstNSI RCATGY 3 cut(s) 126, 290, 946
BstSCI CCNGG 7 cut(s) 622, 631, 640, 649, 871, 970, 1060
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 561, 1056
BstYI RGATCY 2 cut(s) 561, 1056
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 969
BtsCI GGATG 6 cut(s) 82, 311, 606, 745, 1008, 1032
BtsI GCAGTG 2 cut(s) 337, 578
BtsIMutI CAGTG 4 cut(s) 105, 318, 337, 578
BveI ACCTGC 4 cut(s) 878, 921, 936, 966
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 526, 890
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 1 cut(s) 1095
CviAII CATG 4 cut(s) 123, 245, 287, 943
CviQI GTAC 1 cut(s) 1095
DdeI CTNAG 2 cut(s) 310, 558
DpnI GATC 3 cut(s) 543, 563, 1058
DpnII GATC 3 cut(s) 541, 561, 1056
Eam1104I CTCTTC 2 cut(s) 376, 873
EarI CTCTTC 2 cut(s) 376, 873
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 526, 890
Eco57I CTGAAG 2 cut(s) 42, 812
EcoRI GAATTC 3 cut(s) 484, 645, 1065
EcoRII CCWGG 6 cut(s) 622, 631, 640, 649, 871, 970
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 126, 248, 290, 946
FaqI GGGAC 3 cut(s) 415, 539, 605
FatI CATG 4 cut(s) 122, 244, 286, 942
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 6 cut(s) 69, 318, 593, 732, 995, 1019
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 66, 722
GlaI GCGC 1 cut(s) 744
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 2 cut(s) 477, 1076
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 1062
HhaI GCGC 1 cut(s) 745
Hin1II CATG 4 cut(s) 126, 248, 290, 946
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HinfI GANTC 6 cut(s) 403, 627, 904, 919, 934, 979
HpaII CCGG 1 cut(s) 1062
HphI GGTGA 5 cut(s) 289, 421, 737, 984, 1092
Hpy166II GTNNAC 3 cut(s) 112, 335, 526
Hpy188I TCNGA 3 cut(s) 61, 483, 1056
Hpy188III TCNNGA 3 cut(s) 292, 539, 749
Hpy8I GTNNAC 3 cut(s) 112, 335, 526
HpyAV CCTTC 5 cut(s) 66, 96, 272, 296, 442
HpyCH4III ACNGT 4 cut(s) 19, 109, 116, 344
HpyCH4V TGCA 3 cut(s) 92, 189, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 893
HpyF3I CTNAG 2 cut(s) 310, 558
Hsp92II CATG 4 cut(s) 126, 248, 290, 946
HspAI GCGC 1 cut(s) 743
Kzo9I GATC 3 cut(s) 541, 561, 1056
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 3 cut(s) 296, 754, 1085
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 2 cut(s) 66, 722
MaeIII GTNAC 2 cut(s) 116, 990
MalI GATC 3 cut(s) 543, 563, 1058
MboI GATC 3 cut(s) 541, 561, 1056
MboII GAAGA 6 cut(s) 88, 363, 418, 860, 1071, 1074
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 2 cut(s) 561, 1056
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 3 cut(s) 397, 621, 973
MmeI TCCRAC 1 cut(s) 717
MseI TTAA 2 cut(s) 497, 848
MspI CCGG 1 cut(s) 1062
MspR9I CCNGG 7 cut(s) 624, 633, 642, 651, 873, 972, 1062
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 2 cut(s) 191, 477
MvaI CCWGG 6 cut(s) 624, 633, 642, 651, 873, 972
MwoI GCNNNNNNNGC 2 cut(s) 359, 893
NciI CCSGG 1 cut(s) 1062
NcoI CCATGG 1 cut(s) 244
NdeII GATC 3 cut(s) 541, 561, 1056
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 126, 248, 290, 946
NlaIV GGNNCC 2 cut(s) 528, 1058
NmuCI GTSAC 2 cut(s) 116, 990
NspI RCATGY 3 cut(s) 126, 290, 946
PciI ACATGT 2 cut(s) 122, 286
PctI GAATGC 2 cut(s) 191, 477
PfeI GAWTC 3 cut(s) 904, 919, 934
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 3 cut(s) 397, 621, 973
PpsI GAGTC 3 cut(s) 397, 621, 973
PscI ACATGT 2 cut(s) 122, 286
PshBI ATTAAT 1 cut(s) 848
Psp6I CCWGG 6 cut(s) 622, 631, 640, 649, 871, 970
PspFI CCCAGC 2 cut(s) 473, 1072
PspGI CCWGG 6 cut(s) 622, 631, 640, 649, 871, 970
PspN4I GGNNCC 2 cut(s) 528, 1058
PspPI GGNCC 2 cut(s) 526, 890
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 2 cut(s) 561, 1056
RsaI GTAC 1 cut(s) 1096
RsaNI GTAC 1 cut(s) 1095
SaqAI TTAA 2 cut(s) 497, 848
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 3 cut(s) 541, 561, 1056
Sau96I GGNCC 2 cut(s) 526, 890
ScaI AGTACT 1 cut(s) 1096
SchI GAGTC 3 cut(s) 397, 621, 973
ScrFI CCNGG 7 cut(s) 624, 633, 642, 651, 873, 972, 1062
SduI GDGCHC 1 cut(s) 107
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 3 cut(s) 296, 754, 1085
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 526, 890
SmlI CTYRAG 2 cut(s) 383, 519
SmoI CTYRAG 2 cut(s) 383, 519
SspMI CTAG 2 cut(s) 66, 722
StyD4I CCNGG 7 cut(s) 622, 631, 640, 649, 871, 970, 1060
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 4 cut(s) 19, 109, 116, 344
TatI WGTACW 1 cut(s) 1094
TfiI GAWTC 3 cut(s) 904, 919, 934
Tru1I TTAA 2 cut(s) 497, 848
Tru9I TTAA 2 cut(s) 497, 848
TscAI CASTG 4 cut(s) 112, 318, 337, 585
TseFI GTSAC 2 cut(s) 116, 990
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 2 cut(s) 116, 990
TspDTI ATGAA 3 cut(s) 38, 148, 669
TspGWI ACGGA 2 cut(s) 163, 221
TspRI CASTG 4 cut(s) 112, 318, 337, 585
VpaK11BI GGWCC 2 cut(s) 526, 890
VspI ATTAAT 1 cut(s) 848
XapI RAATTY 4 cut(s) 484, 499, 645, 1065
XceI RCATGY 3 cut(s) 126, 290, 946
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 66, 722
ZrmI AGTACT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.