Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000976

Orthogroup ID

OG0001420

Physical Location & Seq

Genomic Coordinates Forward (+)

195047 .. 197662

Gene Structure 2616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTAGAATGGTTGAAGAAAAAAGTTCCTAACATTGGAGATGGTCTCATAAAATTCACAAATCACAAATCATTTTCTTCCGATTCCCCGATCCCTCTCTCTCACTCTCTCCCTCTCTCTCGATCTCTCCGTGTAATCTCTGTTTTCGTTTTTGTTTCCCATTCATTTCGAACTCCCCATTTTTCGAATCGATCGGATCCGATGAGCACCGGCGAGCTTCTCAGCATCGAGCCTCTGGAGCTCAAGTTCCCCTTCGAATTGAAGAAGCAGATCTCCTGTTCGCTCCAGCTCTCGAATAAGACCGATAGCTATGTCGCTTTCAAGGTTAAAACTACGAACCCCAAGAAGTATTGTGTTCGTCCAAACAACGGAATTGTCTTGCCTCGATCCACATGTGATGTTACAGTTACAATGCAAGCCCAAAAAGAGGCTCCTCCGGACATGCAATGTAAGGACAAGTTCCTCCTCCAGAGTGTAAAAACTAACGATGGTGCAACTATGAAGGATATTACTCCTGAAGTGTTCAATAAAGAGGTGGGACATGATGTTGAAGAGTGCAAATTGAGAGTGCTATATGTTTCTCCACCTCATCCACCTTCTCCGGTTCCAGAAGGGTCAGAAGAAGGGTCTTCACCAAGGGTTTCTGCTACTGAGAATGGAAACGTGAATGGTTTTGAGTTTTCCAATGCTGTAAAAGCATTTACTGAGCTTGAACCTCAGGAGAGATCTGCAGAGGCAAGATCACTTATTTTGAAACTGACGGAGGAAAAGAATAAAGCAATTCAACATAGTAACAGGCTTCGTCAAGAGCTGGTGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

275

Amino Acids

30.69

Weight (kDa)

8.87

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	74 - 176	3.2e-32	MSP (Major sperm protein) domain
Cep192_D6	PF22076	74 - 145	9.3e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00170 AT4G00170
fragaria_vesca	FvH4_5g18750 FvH4_7g11210 FvH4_7g11210
malus_domestica	MD00G1043700.v1.1 MD02G1209600.v1.1 MD06G1060200.v1.1 MD07G1116700.v1.1
prunus_persica	Prupe.2G139900_v2.0.a1 Prupe.2G139900_v2.0.a1 Prupe.5G071100_v2.0.a1
pyrus_communis	pycom02g17100 pycom06g04970 pycom07g10820 pycom976g00100
rosa_chinensis	RchiOBHm_Chr1g0349311 RchiOBHm_Chr2g0099851 RchiOBHm_Chr6g0272641 RchiOBHm_Chr7g0203091
rosa_laevigata	RLG00000001232 RLG00000003553 RLG00000011947 RLG00000028558
rosa_multiflora	Rmu_sc0004158.1_g000005 Rmu_sc0006094.1_g000010 Rmu_sc0008864.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035470 Rroxscaffold_1G00035870 Rroxscaffold_2G00106200 Rroxscaffold_3G00254080
rosa_rugosa	Rorug01G0202500 Rorug01G0202600 Rorug01G0202700 Rorug04G0012500 Rorug06G0061900 Rorug07G0074600
rosa_samantha	Rh1AG220200 Rh1BG186200 Rh1CG205300 Rh1DG215700 Rh2BG172200 Rh2CG137700 Rh2DG138100 Rh4AG047500 Rh4CG050300 Rh7AG203300 Rh7BG202900 Rh7CG214000
rosa_wichuraiana	Rw1G018690 Rw2G010320 Rw7G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	436
AclWI	GGATC	4 cut(s)	85, 191, 204, 381
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	35, 368, 427
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	8 cut(s)	16, 262, 322, 526, 551, 713, 754, 785
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	217, 241, 289, 309, 709, 811
AluI	AGCT	6 cut(s)	217, 241, 289, 309, 709, 811
Alw21I	GWGCWC	2 cut(s)	209, 243
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	85, 191, 204, 381
Aor13HI	TCCGGA	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	624
AsuII	TTCGAA	3 cut(s)	169, 185, 255
AxyI	CCTNAGG	1 cut(s)	717
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	2 cut(s)	209, 243
BccI	CCATC	2 cut(s)	35, 482
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	729
BglII	AGATCT	2 cut(s)	270, 725
BmiI	GGNNCC	3 cut(s)	198, 432, 606
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	621
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	3 cut(s)	257, 269, 452
Bpu14I	TTCGAA	3 cut(s)	169, 185, 255
BpuEI	CTTGAG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	635
BsaWI	WCCGGW	2 cut(s)	436, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 368, 427
Bse118I	RCCGGY	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	35, 368, 427
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	4 cut(s)	235, 642, 696, 731
BseRI	GAGGAG	2 cut(s)	423, 455
Bsh1285I	CGRYCG	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	194
BsiHKAI	GWGCWC	2 cut(s)	209, 243
BsiSI	CCGG	3 cut(s)	210, 437, 602
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	35, 368, 427
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	50
Bsp119I	TTCGAA	3 cut(s)	169, 185, 255
Bsp1286I	GDGCHC	2 cut(s)	209, 243
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
BspCNI	CTCAG	4 cut(s)	234, 643, 697, 730
BspDI	ATCGAT	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	198, 432, 606
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	4 cut(s)	85, 191, 204, 381
BspT104I	TTCGAA	3 cut(s)	169, 185, 255
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
BssT1I	CCWWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	546
BstBI	TTCGAA	3 cut(s)	169, 185, 255
BstC8I	GCNNGC	2 cut(s)	215, 417
BstDEI	CTNAG	4 cut(s)	221, 651, 705, 717
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	8 cut(s)	93, 125, 194, 199, 273, 389, 728, 743
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 695
BstNSI	RCATGY	2 cut(s)	396, 445
BstSFI	CTRYAG	1 cut(s)	729
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	3 cut(s)	196, 270, 725
BstYI	RGATCY	3 cut(s)	196, 270, 725
Bsu15I	ATCGAT	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	717
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	215, 417
Cfr10I	RCCGGY	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	190
CviAII	CATG	3 cut(s)	393, 442, 542
DdeI	CTNAG	4 cut(s)	221, 651, 705, 717
DpnI	GATC	8 cut(s)	92, 124, 193, 198, 272, 388, 727, 742
DpnII	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	3 cut(s)	396, 445, 545
FaiI	YATR	9 cut(s)	50, 312, 394, 443, 500, 543, 574, 576, 789
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	3 cut(s)	392, 441, 541
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	5
GsuI	CTGGAG	3 cut(s)	257, 269, 452
HapII	CCGG	3 cut(s)	210, 437, 602
Hin1II	CATG	3 cut(s)	396, 445, 545
HinfI	GANTC	2 cut(s)	83, 187
HpaII	CCGG	3 cut(s)	210, 437, 602
HphI	GGTGA	1 cut(s)	624
Hpy188I	TCNGA	4 cut(s)	82, 196, 201, 619
Hpy188III	TCNNGA	9 cut(s)	120, 236, 292, 437, 469, 515, 608, 719, 806
HpyAV	CCTTC	5 cut(s)	262, 496, 605, 606, 617
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	415, 445, 494, 558, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 695
HpyF3I	CTNAG	4 cut(s)	221, 651, 705, 717
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	396, 445, 545
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
LmnI	GCTCC	3 cut(s)	238, 288, 436
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	400, 406, 791
MalI	GATC	8 cut(s)	92, 124, 193, 198, 272, 388, 727, 742
MboI	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
MboII	GAAGA	6 cut(s)	28, 69, 274, 563, 621, 632
MflI	RGATCY	3 cut(s)	196, 270, 725
MhlI	GDGCHC	2 cut(s)	209, 243
MluCI	AATT	5 cut(s)	53, 257, 372, 560, 780
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	1 cut(s)	327
MspI	CCGG	3 cut(s)	210, 437, 602
MwoI	GCNNNNNNNGC	2 cut(s)	238, 695
NdeII	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
NlaIII	CATG	3 cut(s)	396, 445, 545
NlaIV	GGNNCC	3 cut(s)	198, 432, 606
NspI	RCATGY	2 cut(s)	396, 445
NspV	TTCGAA	3 cut(s)	169, 185, 255
PciI	ACATGT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	83, 187
Ple19I	CGATCG	1 cut(s)	194
PscI	ACATGT	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	198, 432, 606
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	3 cut(s)	196, 270, 725
PvuI	CGATCG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	8 cut(s)	90, 122, 191, 196, 270, 386, 725, 740
SduI	GDGCHC	2 cut(s)	209, 243
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	729
SfuI	TTCGAA	3 cut(s)	169, 185, 255
SgrAI	CRCCGGYG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	53, 257, 372, 560, 780
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	8 cut(s)	121, 169, 185, 190, 228, 255, 293, 385
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	53, 257, 372, 560, 780
TfiI	GAWTC	2 cut(s)	83, 187
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	153, 515
TspGWI	ACGGA	3 cut(s)	119, 384, 776
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	2 cut(s)	396, 445
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.