RchiOBHm_Chr2g0110821

2-dehydro-3-deoxyphosphooctonate aldolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
22417468 .. 22420059
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 141 bp
ATGGCCAAGCACATAAAGATTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACAACCTCAAAATCATTCCGGGGCCCTGGCATGGTTGAAGGGTTAAAGGTGATAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

46

Amino Acids

5.02

Weight (kDa)

10.73

Isoelectric Point (pI)

15.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_1 PF00793 1 - 44 1.1e-06 DAHP synthetase I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 55, 119
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 2 cut(s) 63, 74
AluI AGCT 2 cut(s) 63, 74
AoxI GGCC 2 cut(s) 3, 103
ApaI GGGCCC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 103, 104
AsuC2I CCSGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 101, 108
BmgT120I GGNCC 2 cut(s) 103, 104
BmiI GGNNCC 2 cut(s) 104, 105
BmrFI CCNGG 2 cut(s) 101, 108
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 100, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 100, 106
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 2 cut(s) 5, 105
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 2 cut(s) 5, 105
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 107
BspANI GGCC 2 cut(s) 5, 105
BspLI GGNNCC 2 cut(s) 104, 105
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 100, 106
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 80
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 99, 106
BstSLI GKGCMC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 5, 105
BtsIMutI CAGTG 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 103, 104
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 5, 63, 74, 105
CviKI_1 RGCY 4 cut(s) 5, 63, 74, 105
CviQI GTAC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 107
EcoO109I RGGNCCY 2 cut(s) 103, 104
EcoRII CCWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 14, 113
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 5, 105
HapII CCGG 1 cut(s) 100
Hin1II CATG 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 61
HpaII CCGG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 115
LpnPI CCDG 4 cut(s) 32, 93, 113, 120
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 101, 108
MvaI CCWGG 1 cut(s) 108
NciI CCSGG 1 cut(s) 101
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 104, 105
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 104, 105
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 103, 104
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 125
Sau96I GGNCC 2 cut(s) 103, 104
ScrFI CCNGG 2 cut(s) 101, 108
SduI GDGCHC 1 cut(s) 107
SetI ASST 4 cut(s) 65, 76, 89, 132
SgeI CNNG 9 cut(s) 19, 59, 67, 72, 112, 113, 119, 120, 124
StyD4I CCNGG 2 cut(s) 99, 106
TaaI ACNGT 1 cut(s) 80
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 51
TspRI CASTG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.