RchiOBHm_Chr1g0319971

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001750
Physical Location & Seq
Reverse (-)
7623543 .. 7624968
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAGCCATCTCATACCGGAGTCCCTCATGTTACCTTCATGAATCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTCGATACCTACGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCTGGATTGATGAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

4.83

Isoelectric Point (pI)

24.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 14 - 118 2e-51 PI-PLC-like catalytic domain
PI-PLC_X PF26146 22 - 118 4.9e-12 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 181, 232, 302, 331
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 4 cut(s) 35, 218, 305, 335
AluI AGCT 4 cut(s) 35, 218, 305, 335
ApeKI GCWGC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 355
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 90, 201
Cac8I GCNNGC 1 cut(s) 216
CciI TCATGA 1 cut(s) 75
CviAII CATG 3 cut(s) 65, 76, 194
CviJI RGCY 7 cut(s) 35, 43, 125, 214, 218, 305, 335
CviKI_1 RGCY 7 cut(s) 35, 43, 125, 214, 218, 305, 335
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 3 cut(s) 68, 79, 197
FaiI YATR 6 cut(s) 51, 66, 77, 195, 221, 297
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 64, 75, 193
Fnu4HI GCNGC 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 355
GluI GCNGC 1 cut(s) 336
HapII CCGG 1 cut(s) 54
Hin1II CATG 3 cut(s) 68, 79, 197
HinfI GANTC 2 cut(s) 57, 79
HpaII CCGG 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 76, 83
HpyAV CCTTC 2 cut(s) 82, 187
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 206
Hsp92II CATG 3 cut(s) 68, 79, 197
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 45, 67, 148, 228, 249, 276, 324
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 1 cut(s) 355
MaeIII GTNAC 3 cut(s) 67, 94, 274
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 27, 270
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 2 cut(s) 72, 283
MseI TTAA 2 cut(s) 108, 150
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 68, 79, 197
NmuCI GTSAC 2 cut(s) 94, 274
PagI TCATGA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PsyI GACNNNGTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 108, 150
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 37, 74, 143, 220, 307, 337
SfcI CTRYAG 1 cut(s) 219
Sse9I AATT 2 cut(s) 27, 270
SspMI CTAG 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 27, 270
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 108, 150
Tru9I TTAA 2 cut(s) 108, 150
TscAI CASTG 2 cut(s) 97, 208
TseFI GTSAC 2 cut(s) 94, 274
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 94, 274
TspDTI ATGAA 3 cut(s) 64, 92, 249
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 97, 208
Tth111I GACNNNGTC 1 cut(s) 92
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.