Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

34489226 .. 34490343

Gene Structure 1118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGATTGGTGTTACAAAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATGTTGAAGAAGCTAGATTCTTGTTTGGGTGGGGTGTTGGTTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAACAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGTTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATATGGGATTCCGCATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

202

Amino Acids

21.32

Weight (kDa)

6.73

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	34 - 90	5.7e-10	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	82 - 187	8.3e-39	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	208, 230
AgsI	TTSAA	4 cut(s)	127, 318, 351, 524
AjnI	CCWGG	3 cut(s)	223, 307, 463
AluBI	AGCT	6 cut(s)	7, 133, 325, 356, 428, 482
AluI	AGCT	6 cut(s)	7, 133, 325, 356, 428, 482
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	199, 461
ApeKI	GCWGC	2 cut(s)	368, 425
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	52, 305
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	52, 305
BalI	TGGCCA	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	380, 437
BciT130I	CCWGG	3 cut(s)	225, 309, 465
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	369, 426
BlsI	GCNGC	2 cut(s)	370, 427
Bme1390I	CCNGG	3 cut(s)	225, 309, 465
Bme18I	GGWCC	2 cut(s)	52, 305
BmgT120I	GGNCC	2 cut(s)	52, 305
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	225, 309, 465
BmsI	GCATC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 230
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	3 cut(s)	225, 309, 465
BseDI	CCNNGG	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	208, 230
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	380, 437
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	201, 463
BslFI	GGGAC	2 cut(s)	65, 482
BslI	CCNNNNNNNGG	2 cut(s)	208, 230
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	65, 482
BsnI	GGCC	2 cut(s)	201, 463
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	94, 583
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	2 cut(s)	201, 463
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	591
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	94, 583
Bst2UI	CCWGG	3 cut(s)	225, 309, 465
Bst4CI	ACNGT	2 cut(s)	211, 281
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	97, 586
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	94, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	3 cut(s)	225, 309, 465
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	223, 307, 463
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	380, 437
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	201, 463
BtsIMutI	CAGTG	1 cut(s)	286
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	52, 305
CviAII	CATG	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	96, 585
DpnII	GATC	2 cut(s)	94, 583
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco147I	AGGCCT	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	52, 305
EcoO109I	RGGNCCY	2 cut(s)	52, 305
EcoRII	CCWGG	3 cut(s)	223, 307, 463
EcoT22I	ATGCAT	2 cut(s)	550, 562
FaeI	CATG	1 cut(s)	578
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 167, 199
FaqI	GGGAC	2 cut(s)	65, 482
FatI	CATG	1 cut(s)	574
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	369, 426
Fsp4HI	GCNGC	2 cut(s)	369, 426
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	369, 426
HaeIII	GGCC	2 cut(s)	201, 463
Hin1II	CATG	1 cut(s)	578
HinfI	GANTC	2 cut(s)	137, 568
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	4 cut(s)	99, 120, 601, 608
Hpy188III	TCNNGA	4 cut(s)	16, 169, 298, 581
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	73, 325, 405, 518
HpyCH4III	ACNGT	2 cut(s)	211, 281
HpyCH4V	TGCA	3 cut(s)	368, 548, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	94, 583
Lsp1109I	GCAGC	2 cut(s)	380, 437
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	3 cut(s)	34, 70, 475
MalI	GATC	2 cut(s)	96, 585
MboI	GATC	2 cut(s)	94, 583
MboII	GAAGA	2 cut(s)	139, 250
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	2 cut(s)	107, 318
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	8 cut(s)	81, 157, 172, 234, 338, 400, 453, 496
Mox20I	TGGCCA	1 cut(s)	201
Mph1103I	ATGCAT	2 cut(s)	550, 562
MscI	TGGCCA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	356
MspR9I	CCNGG	3 cut(s)	225, 309, 465
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	3 cut(s)	225, 309, 465
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	2 cut(s)	94, 583
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	475
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	2 cut(s)	550, 562
NspI	RCATGY	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	137, 568
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	370, 427
PpuMI	RGGWCCY	2 cut(s)	52, 305
Psp5II	RGGWCCY	2 cut(s)	52, 305
Psp6I	CCWGG	3 cut(s)	223, 307, 463
PspGI	CCWGG	3 cut(s)	223, 307, 463
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	52, 305
PspPPI	RGGWCCY	2 cut(s)	52, 305
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	356
RruI	TCGCGA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	369, 426
Sau3AI	GATC	2 cut(s)	94, 583
Sau96I	GGNCC	2 cut(s)	52, 305
ScrFI	CCNGG	3 cut(s)	225, 309, 465
SfaNI	GCATC	1 cut(s)	535
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	52, 305
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	107, 318
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	1 cut(s)	134
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	3 cut(s)	223, 307, 463
TaaI	ACNGT	2 cut(s)	211, 281
TaqI	TCGA	4 cut(s)	104, 111, 170, 236
TasI	AATT	2 cut(s)	107, 318
TfiI	GAWTC	2 cut(s)	137, 568
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	368, 425
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	17, 344, 401, 406
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	52, 305
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	134
Zsp2I	ATGCAT	2 cut(s)	550, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.