Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

2084799 .. 2087226

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGTTCCTATTTGGCTGTGGCCGCAGCCTCAGCAAATCCTCCACATTTTATTCAGTTGACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATTGGTGGGTAAAGGTCTGACTTTTGACAGGGGTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGACTACTTTGGCAGATGCATTACATAGAGATTTTAGGAGACTTTGCTTCTTGGAACTCTCTTTTGGAGAATGAGGAAGTTTGGAGTGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGGTCGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGGTTGCAGATGAACTTGTAGAAGAGTATTCTGACCCTATCAATGGCGTTACATCCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

273

Amino Acids

29.15

Weight (kDa)

4.84

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 133	3.8e-47	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	163 - 238	8.5e-21	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	405, 662
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	800
AgsI	TTSAA	2 cut(s)	180, 659
AjnI	CCWGG	3 cut(s)	73, 169, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	6 cut(s)	91, 187, 218, 290, 344, 620
AluI	AGCT	6 cut(s)	91, 187, 218, 290, 344, 620
Alw26I	GTCTC	2 cut(s)	423, 605
AlwNI	CAGNNNCTG	3 cut(s)	170, 218, 383
AoxI	GGCC	4 cut(s)	21, 323, 545, 730
ApeKI	GCWGC	5 cut(s)	26, 215, 230, 287, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspS9I	GGNCC	2 cut(s)	167, 517
AsuHPI	GGTGA	2 cut(s)	89, 575
AvaII	GGWCC	2 cut(s)	167, 517
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvCI	CCTCAGC	1 cut(s)	31
BbvI	GCAGC	5 cut(s)	38, 227, 242, 299, 634
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	3 cut(s)	75, 171, 327
BcoDI	GTCTC	2 cut(s)	423, 605
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	6 cut(s)	24, 27, 216, 231, 288, 648
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	6 cut(s)	25, 28, 217, 232, 289, 649
Bme1390I	CCNGG	3 cut(s)	75, 171, 327
Bme18I	GGWCC	2 cut(s)	167, 517
BmgT120I	GGNCC	2 cut(s)	167, 517
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	75, 171, 327
BmsI	GCATC	3 cut(s)	370, 396, 592
Bpu10I	CCTNAGC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	73, 326, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
BseBI	CCWGG	3 cut(s)	75, 171, 327
BseDI	CCNNGG	3 cut(s)	73, 326, 574
BseGI	GGATG	1 cut(s)	809
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	38, 227, 242, 299, 634
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	23, 325, 547, 732
BslFI	GGGAC	2 cut(s)	344, 650
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	423, 605
BsmFI	GGGAC	2 cut(s)	344, 650
BsnI	GGCC	4 cut(s)	23, 325, 547, 732
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	4 cut(s)	23, 325, 547, 732
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	73, 326, 574
Bst2UI	CCWGG	3 cut(s)	75, 171, 327
Bst4CI	ACNGT	2 cut(s)	143, 700
Bst6I	CTCTTC	1 cut(s)	774
BstDEI	CTNAG	2 cut(s)	31, 87
BstF5I	GGATG	1 cut(s)	809
BstMAI	GTCTC	2 cut(s)	423, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 236
BstNI	CCWGG	3 cut(s)	75, 171, 327
BstSCI	CCNGG	3 cut(s)	73, 169, 325
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	5 cut(s)	38, 227, 242, 299, 634
BsuRI	GGCC	4 cut(s)	23, 325, 547, 732
BtsCI	GGATG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	91
CaiI	CAGNNNCTG	3 cut(s)	170, 218, 383
Cfr13I	GGNCC	2 cut(s)	167, 517
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	3 cut(s)	497, 514, 521
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	31, 87
DraI	TTTAAA	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco147I	AGGCCT	2 cut(s)	325, 547
Eco47I	GGWCC	2 cut(s)	167, 517
Eco57I	CTGAAG	2 cut(s)	405, 662
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	73, 169, 325
EcoT22I	ATGCAT	2 cut(s)	411, 502
FaeI	CATG	3 cut(s)	500, 517, 524
FaqI	GGGAC	2 cut(s)	344, 650
FatI	CATG	3 cut(s)	496, 513, 520
Fnu4HI	GCNGC	6 cut(s)	24, 27, 216, 231, 288, 648
FokI	GGATG	1 cut(s)	796
Fsp4HI	GCNGC	6 cut(s)	24, 27, 216, 231, 288, 648
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	6 cut(s)	24, 27, 216, 231, 288, 648
HaeIII	GGCC	4 cut(s)	23, 325, 547, 732
Hin1II	CATG	3 cut(s)	500, 517, 524
HincII	GTYRAC	2 cut(s)	60, 742
HindII	GTYRAC	2 cut(s)	60, 742
HindIII	AAGCTT	1 cut(s)	89
HphI	GGTGA	2 cut(s)	89, 575
Hpy166II	GTNNAC	3 cut(s)	60, 80, 742
Hpy188I	TCNGA	2 cut(s)	120, 790
Hpy188III	TCNNGA	2 cut(s)	160, 635
Hpy8I	GTNNAC	3 cut(s)	60, 80, 742
HpyAV	CCTTC	4 cut(s)	187, 267, 380, 686
HpyCH4III	ACNGT	2 cut(s)	143, 700
HpyCH4V	TGCA	4 cut(s)	230, 409, 500, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 236
HpyF3I	CTNAG	2 cut(s)	31, 87
Hsp92II	CATG	3 cut(s)	500, 517, 524
Lsp1109I	GCAGC	5 cut(s)	38, 227, 242, 299, 634
LweI	GCATC	3 cut(s)	370, 396, 592
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	337, 805
MboII	GAAGA	2 cut(s)	578, 791
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	3 cut(s)	95, 180, 539
Mph1103I	ATGCAT	2 cut(s)	411, 502
MseI	TTAA	4 cut(s)	93, 504, 542, 684
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	75, 171, 327
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	3 cut(s)	75, 171, 327
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 236
NlaIII	CATG	3 cut(s)	500, 517, 524
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	2 cut(s)	411, 502
PceI	AGGCCT	2 cut(s)	325, 547
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	6 cut(s)	25, 28, 217, 232, 289, 649
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	73, 169, 325
PspGI	CCWGG	3 cut(s)	73, 169, 325
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	167, 517
PspPPI	RGGWCCY	1 cut(s)	167
PstNI	CAGNNNCTG	3 cut(s)	170, 218, 383
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	93, 504, 542, 684
SatI	GCNGC	6 cut(s)	24, 27, 216, 231, 288, 648
Sau96I	GGNCC	2 cut(s)	167, 517
ScrFI	CCNGG	3 cut(s)	75, 171, 327
SfaNI	GCATC	3 cut(s)	370, 396, 592
SfcI	CTRYAG	1 cut(s)	720
SinI	GGWCC	2 cut(s)	167, 517
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	95, 180, 539
SseBI	AGGCCT	2 cut(s)	325, 547
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	617
StuI	AGGCCT	2 cut(s)	325, 547
StyD4I	CCNGG	3 cut(s)	73, 169, 325
TaaI	ACNGT	2 cut(s)	143, 700
TasI	AATT	3 cut(s)	95, 180, 539
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	93, 504, 542, 684
Tru9I	TTAA	4 cut(s)	93, 504, 542, 684
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	5 cut(s)	26, 215, 230, 287, 647
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	206, 263, 268, 552, 783
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	167, 517
XspI	CTAG	1 cut(s)	617
Zsp2I	ATGCAT	2 cut(s)	411, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.