Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8131160.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 528

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8131160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

atggctcacactatcgctcgcgccactctcggcctcactcatatttctccggcctttgaagcccctaagctcactttcgcgacgaaagagattgatgtaacggaatggaaaggggacctgcttgcggttggtgttacagagaaggacttggcgaaagatcagaactcgaaattcgaaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

60

Amino Acids

6.57

Weight (kDa)

5.51

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccII	CGCG	2 cut(s)	21, 80
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AoxI	GGCC	2 cut(s)	31, 51
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	21, 80
BshFI	GGCC	2 cut(s)	33, 53
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	33, 53
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	157
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	33, 53
BspFNI	CGCG	2 cut(s)	21, 80
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	174
BssMI	GATC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	19, 123
BstDEI	CTNAG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	21, 80
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstUI	CGCG	2 cut(s)	21, 80
BsuRI	GGCC	2 cut(s)	33, 53
BtuMI	TCGCGA	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	19, 123
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	115
CviJI	RGCY	5 cut(s)	5, 33, 53, 62, 70
CviKI_1	RGCY	5 cut(s)	5, 33, 53, 62, 70
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	115
FaiI	YATR	1 cut(s)	42
FaqI	GGGAC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	33, 53
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	63, 131
MaeIII	GTNAC	2 cut(s)	97, 133
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MluCI	AATT	1 cut(s)	170
MnlI	CCTC	1 cut(s)	44
MspI	CCGG	1 cut(s)	50
MvnI	CGCG	2 cut(s)	21, 80
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	9
NruI	TCGCGA	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	174
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
RruI	TCGCGA	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	115
SetI	ASST	2 cut(s)	72, 120
SfuI	TTCGAA	1 cut(s)	174
SgeI	CNNG	8 cut(s)	30, 32, 41, 62, 91, 130, 134, 160
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	125
TaqI	TCGA	2 cut(s)	167, 174
TasI	AATT	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.