Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

82426254 .. 82431516

Gene Structure 5263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAGCTCACTTTCGCGACGAAAGAGATTGATGTAACTGAATGGAAAGGGGGCCTGCTTGCGATTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCAAAAATTCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGGCTTCCTGGTCTTGGCTCGAAAAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGATGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGATCAATAACACAGATGCTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATCTAGGATTCCGCATGGAAATGTTTTATCATGCATTAATGGGTACATGGACCATGCTTTCTCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACAGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGGTTGCAGATGAACTTGTAGAAGAGTTTTCTGACCCTATCAATGGCGTTACATCCCCTGTTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

301

Amino Acids

31.56

Weight (kDa)

5.04

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	77 - 182	1.9e-40	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	193 - 263	8.1e-18	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	107, 115
AcuI	CTGAAG	2 cut(s)	525, 737
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	212, 875, 895
AgsI	TTSAA	4 cut(s)	112, 127, 300, 734
AjnI	CCWGG	3 cut(s)	205, 289, 445
AluBI	AGCT	7 cut(s)	7, 133, 307, 338, 410, 464, 695
AluI	AGCT	7 cut(s)	7, 133, 307, 338, 410, 464, 695
Alw26I	GTCTC	2 cut(s)	172, 680
AlwNI	CAGNNNCTG	4 cut(s)	290, 338, 503, 779
AoxI	GGCC	4 cut(s)	52, 443, 620, 805
ApeKI	GCWGC	4 cut(s)	335, 350, 407, 722
ApoI	RAATTY	2 cut(s)	107, 115
AseI	ATTAAT	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	52, 287, 592
AsuHPI	GGTGA	2 cut(s)	650, 716
AvaII	GGWCC	2 cut(s)	287, 592
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	347, 362, 419, 709
BceAI	ACGGC	1 cut(s)	730
BciT130I	CCWGG	3 cut(s)	207, 291, 447
BcoDI	GTCTC	2 cut(s)	172, 680
BfaI	CTAG	2 cut(s)	546, 692
BfmI	CTRYAG	1 cut(s)	795
BisI	GCNGC	4 cut(s)	336, 351, 408, 723
BlsI	GCNGC	4 cut(s)	337, 352, 409, 724
Bme1390I	CCNGG	3 cut(s)	207, 291, 447
Bme18I	GGWCC	2 cut(s)	287, 592
BmgT120I	GGNCC	3 cut(s)	52, 287, 592
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	207, 291, 447
BmsI	GCATC	4 cut(s)	490, 517, 551, 667
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	446, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 875, 895
BseBI	CCWGG	3 cut(s)	207, 291, 447
BseDI	CCNNGG	2 cut(s)	446, 649
BseGI	GGATG	1 cut(s)	884
BseLI	CCNNNNNNNGG	3 cut(s)	212, 875, 895
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	347, 362, 419, 709
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	4 cut(s)	54, 445, 622, 807
BslFI	GGGAC	2 cut(s)	464, 725
BslI	CCNNNNNNNGG	3 cut(s)	212, 875, 895
BsmAI	GTCTC	2 cut(s)	172, 680
BsmFI	GGGAC	2 cut(s)	464, 725
BsnI	GGCC	4 cut(s)	54, 445, 622, 807
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	94, 486, 706
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	4 cut(s)	54, 445, 622, 807
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	446, 649
BssMI	GATC	3 cut(s)	94, 486, 706
Bst2UI	CCWGG	3 cut(s)	207, 291, 447
Bst4CI	ACNGT	2 cut(s)	263, 775
Bst6I	CTCTTC	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	56, 60
BstDEI	CTNAG	2 cut(s)	162, 174
BstF5I	GGATG	1 cut(s)	884
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	97, 489, 709
BstMAI	GTCTC	2 cut(s)	172, 680
BstMBI	GATC	3 cut(s)	94, 486, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	3 cut(s)	207, 291, 447
BstSCI	CCNGG	3 cut(s)	205, 289, 445
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	347, 362, 419, 709
BsuRI	GGCC	4 cut(s)	54, 445, 622, 807
BtsCI	GGATG	1 cut(s)	884
BtsIMutI	CAGTG	1 cut(s)	268
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	56, 60
CaiI	CAGNNNCTG	4 cut(s)	290, 338, 503, 779
Cfr13I	GGNCC	3 cut(s)	52, 287, 592
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	4 cut(s)	557, 573, 589, 596
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	2 cut(s)	162, 174
DpnI	GATC	3 cut(s)	96, 488, 708
DpnII	GATC	3 cut(s)	94, 486, 706
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco147I	AGGCCT	2 cut(s)	445, 622
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	287, 592
Eco57I	CTGAAG	2 cut(s)	525, 737
EcoO109I	RGGNCCY	2 cut(s)	52, 287
EcoRII	CCWGG	3 cut(s)	205, 289, 445
EcoT22I	ATGCAT	3 cut(s)	532, 544, 578
FaeI	CATG	4 cut(s)	560, 576, 592, 599
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	464, 725
FatI	CATG	4 cut(s)	556, 572, 588, 595
Fnu4HI	GCNGC	4 cut(s)	336, 351, 408, 723
FokI	GGATG	1 cut(s)	871
Fsp4HI	GCNGC	4 cut(s)	336, 351, 408, 723
FspBI	CTAG	2 cut(s)	546, 692
GluI	GCNGC	4 cut(s)	336, 351, 408, 723
HaeIII	GGCC	4 cut(s)	54, 445, 622, 807
Hin1II	CATG	4 cut(s)	560, 576, 592, 599
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	2 cut(s)	137, 550
HphI	GGTGA	2 cut(s)	650, 716
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	3 cut(s)	99, 382, 865
Hpy188III	TCNNGA	4 cut(s)	16, 169, 280, 710
Hpy8I	GTNNAC	1 cut(s)	817
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	73, 307, 387, 500, 761
HpyCH4III	ACNGT	2 cut(s)	263, 775
HpyCH4V	TGCA	5 cut(s)	350, 530, 542, 576, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	162, 174
Hsp92II	CATG	4 cut(s)	560, 576, 592, 599
Kzo9I	GATC	3 cut(s)	94, 486, 706
Lsp1109I	GCAGC	4 cut(s)	347, 362, 419, 709
LweI	GCATC	4 cut(s)	490, 517, 551, 667
MaeI	CTAG	2 cut(s)	546, 692
MaeIII	GTNAC	4 cut(s)	34, 70, 457, 880
MalI	GATC	3 cut(s)	96, 488, 708
MboI	GATC	3 cut(s)	94, 486, 706
MboII	GAAGA	3 cut(s)	139, 653, 866
MfeI	CAATTG	1 cut(s)	300
MluCI	AATT	4 cut(s)	107, 115, 300, 614
Mph1103I	ATGCAT	3 cut(s)	532, 544, 578
MseI	TTAA	3 cut(s)	579, 617, 759
MslI	CAYNNNNRTG	2 cut(s)	561, 630
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	207, 291, 447
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	3 cut(s)	207, 291, 447
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	94, 486, 706
NlaIII	CATG	4 cut(s)	560, 576, 592, 599
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	457
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	3 cut(s)	532, 544, 578
PceI	AGGCCT	2 cut(s)	445, 622
PfeI	GAWTC	2 cut(s)	137, 550
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	337, 352, 409, 724
PpuMI	RGGWCCY	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	205, 289, 445
PspGI	CCWGG	3 cut(s)	205, 289, 445
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	52, 287, 592
PspPPI	RGGWCCY	1 cut(s)	287
PstNI	CAGNNNCTG	4 cut(s)	290, 338, 503, 779
PsyI	GACNNNGTC	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	2 cut(s)	561, 630
SaqAI	TTAA	3 cut(s)	579, 617, 759
SatI	GCNGC	4 cut(s)	336, 351, 408, 723
Sau3AI	GATC	3 cut(s)	94, 486, 706
Sau96I	GGNCC	3 cut(s)	52, 287, 592
ScrFI	CCNGG	3 cut(s)	207, 291, 447
SfaNI	GCATC	4 cut(s)	490, 517, 551, 667
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	287, 592
SmiMI	CAYNNNNRTG	2 cut(s)	561, 630
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	107, 115, 300, 614
SseBI	AGGCCT	2 cut(s)	445, 622
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	2 cut(s)	546, 692
StuI	AGGCCT	2 cut(s)	445, 622
StyD4I	CCNGG	3 cut(s)	205, 289, 445
TaaI	ACNGT	2 cut(s)	263, 775
TaqI	TCGA	4 cut(s)	104, 119, 170, 218
TasI	AATT	4 cut(s)	107, 115, 300, 614
TfiI	GAWTC	2 cut(s)	137, 550
Tru1I	TTAA	3 cut(s)	579, 617, 759
Tru9I	TTAA	3 cut(s)	579, 617, 759
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	335, 350, 407, 722
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	6 cut(s)	17, 326, 383, 388, 627, 858
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	287, 592
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	2 cut(s)	107, 115
XspI	CTAG	2 cut(s)	546, 692
Zsp2I	ATGCAT	3 cut(s)	532, 544, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.