Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

29185561 .. 29186660

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACGAAAGAGATTGATGTAATGGAATGGAAAGGGGACCTGCTTGCGATTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGTTGAGGTCTCGACTAAGGAGGACTACACAGGAAAGTCTGGCCAGTCTACTGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAAGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATGGTCAATAACAGAGATGCTGAAGGCAGACTGACTTTGGCAGGTGCATTAGTATATGCATCTGGGATTCCGCATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

187

Amino Acids

19.76

Weight (kDa)

6.73

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	17 - 86	5.4e-09	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	77 - 173	1.6e-25	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	2 cut(s)	48, 488
AccI	GTMKAC	1 cut(s)	191
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	112, 303
AjnI	CCWGG	3 cut(s)	208, 292, 448
AluBI	AGCT	4 cut(s)	118, 310, 341, 413
AluI	AGCT	4 cut(s)	118, 310, 341, 413
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	546
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	184, 446
ApeKI	GCWGC	3 cut(s)	338, 353, 410
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	350, 365, 422
BciT130I	CCWGG	3 cut(s)	210, 294, 450
BcoDI	GTCTC	1 cut(s)	157
BfuAI	ACCTGC	2 cut(s)	48, 488
BisI	GCNGC	3 cut(s)	339, 354, 411
BlsI	GCNGC	3 cut(s)	340, 355, 412
Bme1390I	CCNGG	3 cut(s)	210, 294, 450
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	210, 294, 450
BmsI	GCATC	2 cut(s)	463, 524
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	210, 294, 450
BseDI	CCNNGG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	350, 365, 422
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	186, 448
BslFI	GGGAC	2 cut(s)	50, 467
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	50, 467
BsnI	GGCC	2 cut(s)	186, 448
Bso31I	GGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	79, 538
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	2 cut(s)	186, 448
BspLI	GGNNCC	1 cut(s)	38
BspMI	ACCTGC	2 cut(s)	48, 488
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	79, 538
Bst2UI	CCWGG	3 cut(s)	210, 294, 450
Bst4CI	ACNGT	2 cut(s)	196, 266
Bst6I	CTCTTC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	82, 541
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	79, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	3 cut(s)	210, 294, 450
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	208, 292, 448
BstV1I	GCAGC	3 cut(s)	350, 365, 422
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	186, 448
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	2 cut(s)	48, 488
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	2 cut(s)	457, 530
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	81, 540
DpnII	GATC	2 cut(s)	79, 538
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	208, 292, 448
EcoT22I	ATGCAT	1 cut(s)	517
FaeI	CATG	2 cut(s)	460, 533
FaiI	YATR	9 cut(s)	314, 326, 425, 443, 458, 511, 513, 531, 545
FaqI	GGGAC	2 cut(s)	50, 467
FatI	CATG	2 cut(s)	456, 529
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	339, 354, 411
Fsp4HI	GCNGC	3 cut(s)	339, 354, 411
GluI	GCNGC	3 cut(s)	339, 354, 411
HaeIII	GGCC	2 cut(s)	186, 448
Hin1II	CATG	2 cut(s)	460, 533
HinfI	GANTC	2 cut(s)	122, 523
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	4 cut(s)	84, 105, 556, 563
Hpy188III	TCNNGA	3 cut(s)	154, 283, 536
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	4 cut(s)	58, 310, 390, 473
HpyCH4III	ACNGT	2 cut(s)	196, 266
HpyCH4V	TGCA	3 cut(s)	353, 503, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	460, 533
Kzo9I	GATC	2 cut(s)	79, 538
Lsp1109I	GCAGC	3 cut(s)	350, 365, 422
LweI	GCATC	2 cut(s)	463, 524
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	81, 540
MboI	GATC	2 cut(s)	79, 538
MboII	GAAGA	2 cut(s)	124, 235
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	2 cut(s)	92, 303
MluNI	TGGCCA	1 cut(s)	186
MnlI	CCTC	7 cut(s)	66, 142, 157, 219, 323, 385, 438
Mox20I	TGGCCA	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	3 cut(s)	210, 294, 450
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	3 cut(s)	210, 294, 450
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	2 cut(s)	79, 538
NlaIII	CATG	2 cut(s)	460, 533
NlaIV	GGNNCC	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	122, 523
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	340, 355, 412
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	208, 292, 448
PspGI	CCWGG	3 cut(s)	208, 292, 448
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	341
SatI	GCNGC	3 cut(s)	339, 354, 411
Sau3AI	GATC	2 cut(s)	79, 538
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	3 cut(s)	210, 294, 450
SfaNI	GCATC	2 cut(s)	463, 524
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	92, 303
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	3 cut(s)	208, 292, 448
TaaI	ACNGT	2 cut(s)	196, 266
TaqI	TCGA	4 cut(s)	89, 96, 155, 221
TasI	AATT	2 cut(s)	92, 303
TfiI	GAWTC	2 cut(s)	122, 523
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	3 cut(s)	338, 353, 410
TspDTI	ATGAA	3 cut(s)	329, 386, 391
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.