Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012973.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

11596 .. 12045

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012973.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgaagctcacttttgctacgaaagagattgatgtaacggaatggaaaggggcaggtgttagtgttacgcagaaggacttggcgaaagatcagaactcgaaattcaaaaatctgatattgaagaagctggattcctgtttgggtggggtgttggctgaggtcttgactgaggaggacttcacaggaaagtctggccagtctacggttgttaggcttcctggtcttggctcaaagagggttggcttgtttgggcttggacaatttggttcgtctacagaagcttttaagggtcttggggaggctgcagcagcagcggcaaagactactcaagcaagtgatattgctatgtgcttgcttccttggaggggctttctacgaaatcttgccaatgttctcacacctggtttgttttggctttactattgccattttggtgggccatacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

149

Amino Acids

16.0

Weight (kDa)

9.01

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	2 cut(s)	200, 272
AciI	CCGC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	202, 224, 365
AgsI	TTSAA	2 cut(s)	106, 121
AjnI	CCWGG	2 cut(s)	217, 400
AluBI	AGCT	3 cut(s)	7, 127, 281
AluI	AGCT	3 cut(s)	7, 127, 281
AoxI	GGCC	2 cut(s)	193, 437
ApeKI	GCWGC	4 cut(s)	302, 305, 308, 311
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	289, 317, 320, 323
BciT130I	CCWGG	2 cut(s)	219, 402
BfmI	CTRYAG	2 cut(s)	273, 303
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	5 cut(s)	303, 306, 309, 312, 315
BlsI	GCNGC	5 cut(s)	304, 307, 310, 313, 316
Bme1390I	CCNGG	2 cut(s)	219, 402
BmgT120I	GGNCC	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	219, 402
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 224, 365
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	219, 402
BseDI	CCNNGG	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	202, 224, 365
BseMII	CTCAG	2 cut(s)	147, 159
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	289, 317, 320, 323
BshFI	GGCC	2 cut(s)	195, 439
BslI	CCNNNNNNNGG	3 cut(s)	202, 224, 365
BsnI	GGCC	2 cut(s)	195, 439
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	2 cut(s)	195, 439
BspCNI	CTCAG	2 cut(s)	148, 160
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	219, 402
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	156, 168
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 311, 314
BstNI	CCWGG	2 cut(s)	219, 402
BstSCI	CCNGG	2 cut(s)	217, 400
BstSFI	CTRYAG	2 cut(s)	273, 303
BstV1I	GCAGC	4 cut(s)	289, 317, 320, 323
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	195, 439
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	156, 168
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	217, 400
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaiI	YATR	2 cut(s)	347, 442
FblI	GTMKAC	2 cut(s)	200, 272
Fnu4HI	GCNGC	5 cut(s)	303, 306, 309, 312, 315
Fsp4HI	GCNGC	5 cut(s)	303, 306, 309, 312, 315
GluI	GCNGC	5 cut(s)	303, 306, 309, 312, 315
HaeIII	GGCC	2 cut(s)	195, 439
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	201, 273
Hpy188I	TCNGA	2 cut(s)	93, 114
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	201, 273
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 311, 314
HpyF3I	CTNAG	2 cut(s)	156, 168
Kzo9I	GATC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	289, 317, 320, 323
MabI	ACCWGGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	34, 64
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	101, 260
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	6 cut(s)	151, 163, 166, 228, 292, 357
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	219, 402
MvaI	CCWGG	2 cut(s)	219, 402
MwoI	GCNNNNNNNGC	3 cut(s)	308, 311, 314
NdeII	GATC	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	304, 307, 310, 313, 316
Psp6I	CCWGG	2 cut(s)	217, 400
PspGI	CCWGG	2 cut(s)	217, 400
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	5 cut(s)	303, 306, 309, 312, 315
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	219, 402
SetI	ASST	6 cut(s)	9, 58, 129, 162, 283, 403
SexAI	ACCWGGT	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	273, 303
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	101, 260
SsiI	CCGC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	217, 400
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	101, 260
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	4 cut(s)	302, 305, 308, 311
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	53
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	200, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.