Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

17228336 .. 17231429

Gene Structure 3094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 907 bp

ATGTCTGTTCAGCTCACTTTCGCGACAAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGGTTTGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTAAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTAGTCTTGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAAATTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAAACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCACATGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAAGAAATAAGAAGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGATACCTATTATTAGAAAGATGGCTCTGCAAAAGTTGATGGAAATCTGCCGGTATTACTGTAACAAATGTTCTGAAGGTCACATTGCAATAAGTGACCACTTTGAACAAATTCCAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

302

Amino Acids

32.69

Weight (kDa)

6.01

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	79 - 166	2.5e-33	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	174 - 249	1.9e-21	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	113, 415, 900
AcuI	CTGAAG	3 cut(s)	477, 695, 885
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	3 cut(s)	67, 214, 236
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	133, 252, 692, 896
AjnI	CCWGG	2 cut(s)	241, 397
AluBI	AGCT	6 cut(s)	13, 139, 259, 290, 362, 653
AluI	AGCT	6 cut(s)	13, 139, 259, 290, 362, 653
Alw26I	GTCTC	2 cut(s)	178, 638
AlwNI	CAGNNNCTG	2 cut(s)	290, 455
AoxI	GGCC	4 cut(s)	205, 395, 578, 763
ApeKI	GCWGC	4 cut(s)	287, 302, 359, 680
ApoI	RAATTY	3 cut(s)	113, 415, 900
Asp700I	GAANNNNTTC	1 cut(s)	900
AspS9I	GGNCC	3 cut(s)	58, 239, 550
AsuHPI	GGTGA	2 cut(s)	608, 674
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	3 cut(s)	58, 239, 550
BalI	TGGCCA	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	299, 314, 371, 667
BccI	CCATC	2 cut(s)	805, 823
BceAI	ACGGC	1 cut(s)	688
BciT130I	CCWGG	2 cut(s)	243, 399
BcoDI	GTCTC	2 cut(s)	178, 638
BfaI	CTAG	2 cut(s)	231, 650
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	4 cut(s)	288, 303, 360, 681
BlsI	GCNGC	4 cut(s)	289, 304, 361, 682
Bme1390I	CCNGG	2 cut(s)	243, 399
Bme18I	GGWCC	3 cut(s)	58, 239, 550
BmgT120I	GGNCC	3 cut(s)	58, 239, 550
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	2 cut(s)	243, 399
BmsI	GCATC	4 cut(s)	442, 469, 503, 625
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	833
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	398, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 214, 236
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	2 cut(s)	243, 399
BseDI	CCNNGG	2 cut(s)	398, 607
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	3 cut(s)	67, 214, 236
BseMI	GCAATG	1 cut(s)	873
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	299, 314, 371, 667
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	4 cut(s)	207, 397, 580, 765
BsiSI	CCGG	1 cut(s)	841
BslFI	GGGAC	3 cut(s)	71, 416, 683
BslI	CCNNNNNNNGG	3 cut(s)	67, 214, 236
BsmAI	GTCTC	2 cut(s)	178, 638
BsmFI	GGGAC	3 cut(s)	71, 416, 683
BsnI	GGCC	4 cut(s)	207, 397, 580, 765
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	100, 664
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	4 cut(s)	207, 397, 580, 765
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	59
BspMI	ACCTGC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	2 cut(s)	398, 607
BssMI	GATC	2 cut(s)	100, 664
Bst2UI	CCWGG	2 cut(s)	243, 399
Bst4CI	ACNGT	2 cut(s)	217, 851
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	168, 180
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	103, 667
BstMAI	GTCTC	2 cut(s)	178, 638
BstMBI	GATC	2 cut(s)	100, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	243, 399
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	241, 397
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	4 cut(s)	299, 314, 371, 667
BsuRI	GGCC	4 cut(s)	207, 397, 580, 765
BtuMI	TCGCGA	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	290, 455
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	3 cut(s)	58, 239, 550
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	4 cut(s)	509, 530, 547, 554
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	168, 180
DpnI	GATC	2 cut(s)	102, 666
DpnII	GATC	2 cut(s)	100, 664
DraI	TTTAAA	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	205
Eco147I	AGGCCT	2 cut(s)	397, 580
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	3 cut(s)	58, 239, 550
Eco57I	CTGAAG	3 cut(s)	477, 695, 885
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	241, 397
EcoT22I	ATGCAT	3 cut(s)	484, 496, 535
FaeI	CATG	4 cut(s)	512, 533, 550, 557
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	3 cut(s)	71, 416, 683
FatI	CATG	4 cut(s)	508, 529, 546, 553
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	288, 303, 360, 681
Fsp4HI	GCNGC	4 cut(s)	288, 303, 360, 681
FspBI	CTAG	2 cut(s)	231, 650
GluI	GCNGC	4 cut(s)	288, 303, 360, 681
HaeIII	GGCC	4 cut(s)	207, 397, 580, 765
HapII	CCGG	1 cut(s)	841
Hin1II	CATG	4 cut(s)	512, 533, 550, 557
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	2 cut(s)	143, 502
HpaII	CCGG	1 cut(s)	841
HphI	GGTGA	2 cut(s)	608, 674
Hpy166II	GTNNAC	2 cut(s)	213, 775
Hpy188I	TCNGA	3 cut(s)	105, 126, 865
Hpy188III	TCNNGA	3 cut(s)	22, 175, 668
Hpy8I	GTNNAC	2 cut(s)	213, 775
HpyAV	CCTTC	7 cut(s)	79, 259, 339, 452, 719, 724, 860
HpyCH4III	ACNGT	2 cut(s)	217, 851
HpyCH4V	TGCA	6 cut(s)	302, 482, 494, 533, 820, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	168, 180
Hsp92II	CATG	4 cut(s)	512, 533, 550, 557
Kzo9I	GATC	2 cut(s)	100, 664
Lsp1109I	GCAGC	4 cut(s)	299, 314, 371, 667
LweI	GCATC	4 cut(s)	442, 469, 503, 625
MaeI	CTAG	2 cut(s)	231, 650
MaeIII	GTNAC	6 cut(s)	40, 76, 409, 851, 869, 884
MalI	GATC	2 cut(s)	102, 666
MboI	GATC	2 cut(s)	100, 664
MboII	GAAGA	2 cut(s)	145, 611
MfeI	CAATTG	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	113, 252, 415, 572, 900
MluNI	TGGCCA	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	3 cut(s)	484, 496, 535
MroXI	GAANNNNTTC	1 cut(s)	900
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	3 cut(s)	537, 575, 717
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	841
MspR9I	CCNGG	2 cut(s)	243, 399
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	2 cut(s)	243, 399
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	100, 664
NlaIII	CATG	4 cut(s)	512, 533, 550, 557
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	3 cut(s)	409, 869, 884
NruI	TCGCGA	1 cut(s)	23
NsiI	ATGCAT	3 cut(s)	484, 496, 535
NspI	RCATGY	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	117
PceI	AGGCCT	2 cut(s)	397, 580
PciI	ACATGT	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	143, 502
PflFI	GACNNNGTC	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	289, 304, 361, 682
PpuMI	RGGWCCY	1 cut(s)	58
PscI	ACATGT	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	241, 397
PspGI	CCWGG	2 cut(s)	241, 397
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	58, 239, 550
PspPPI	RGGWCCY	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	844, 876
PstNI	CAGNNNCTG	2 cut(s)	290, 455
PsyI	GACNNNGTC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	290
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	537, 575, 717
SatI	GCNGC	4 cut(s)	288, 303, 360, 681
Sau3AI	GATC	2 cut(s)	100, 664
Sau96I	GGNCC	3 cut(s)	58, 239, 550
ScrFI	CCNGG	2 cut(s)	243, 399
SfaNI	GCATC	4 cut(s)	442, 469, 503, 625
SfcI	CTRYAG	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	3 cut(s)	58, 239, 550
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	5 cut(s)	113, 252, 415, 572, 900
SseBI	AGGCCT	2 cut(s)	397, 580
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	231, 650
StuI	AGGCCT	2 cut(s)	397, 580
StyD4I	CCNGG	2 cut(s)	241, 397
TaaI	ACNGT	2 cut(s)	217, 851
TaqI	TCGA	3 cut(s)	110, 117, 176
TasI	AATT	5 cut(s)	113, 252, 415, 572, 900
TfiI	GAWTC	2 cut(s)	143, 502
Tru1I	TTAA	3 cut(s)	537, 575, 717
Tru9I	TTAA	3 cut(s)	537, 575, 717
TseFI	GTSAC	3 cut(s)	409, 869, 884
TseI	GCWGC	4 cut(s)	287, 302, 359, 680
Tsp45I	GTSAC	3 cut(s)	409, 869, 884
TspDTI	ATGAA	4 cut(s)	278, 335, 340, 585
TspGWI	ACGGA	1 cut(s)	59
Tth111I	GACNNNGTC	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	58, 239, 550
XapI	RAATTY	3 cut(s)	113, 415, 900
XceI	RCATGY	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	900
XspI	CTAG	2 cut(s)	231, 650
Zsp2I	ATGCAT	3 cut(s)	484, 496, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.