Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

43152896 .. 43158363

Gene Structure 5468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTGGTGGCGGGATTGGCAATCAACATCCAGTGGAGATTGCAGAAGATAAGCCGAAGATAAAAGAAGTTGTTGTCGGACTAGTTGTGGAAACTGGAGGAGGGAGTTTGCCCATTAATCCCCATGCGTCCAACCCCCTCATGGACATGGTAGTCCCTGACAGTGATTCCGAGGGCGACGTGACAACCCTGGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTAGTTTTGGTGACAGGTCTGTTCAGCTCACTTTCGCGACGAAAGAGATTGATGTAACAGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATCTTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCATAGGAAAGTCTGGCCAGTCTACGGTTATTGGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAACAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTATCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATAAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGATGGATATGCCCAAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGGTTGCAGATGAATTTGTAGAAGAGTTTTCTGACCCGATCAATGGCGTTACATCCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

364

Amino Acids

38.34

Weight (kDa)

4.73

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	104 - 172	4.3e-08	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	173 - 253	3.6e-25	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	254 - 329	3.6e-20	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	12, 308
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	353, 1043
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	6 cut(s)	142, 196, 307, 454, 476, 1073
AgsI	TTSAA	4 cut(s)	373, 564, 597, 932
AhlI	ACTAGT	1 cut(s)	82
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	4 cut(s)	189, 469, 553, 709
AluBI	AGCT	8 cut(s)	213, 253, 379, 571, 602, 674, 728, 893
AluI	AGCT	8 cut(s)	213, 253, 379, 571, 602, 674, 728, 893
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	418, 878
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	5 cut(s)	223, 445, 707, 818, 1003
ApeKI	GCWGC	3 cut(s)	614, 671, 920
ApoI	RAATTY	2 cut(s)	353, 1043
AseI	ATTAAT	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	298, 551, 790
AsuHPI	GGTGA	3 cut(s)	248, 848, 914
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	3 cut(s)	298, 551, 790
BalI	TGGCCA	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	626, 683, 907
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	1 cut(s)	928
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciT130I	CCWGG	4 cut(s)	191, 471, 555, 711
BcoDI	GTCTC	2 cut(s)	418, 878
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	2 cut(s)	83, 890
BfmI	CTRYAG	1 cut(s)	993
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	615, 672, 921
BlsI	GCNGC	3 cut(s)	616, 673, 922
Bme1390I	CCNGG	4 cut(s)	191, 471, 555, 711
Bme18I	GGWCC	3 cut(s)	298, 551, 790
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	298, 551, 790
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	4 cut(s)	191, 471, 555, 711
BmsI	GCATC	1 cut(s)	865
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	171, 189, 710
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 196, 307, 454, 476, 1073
Bse1I	ACTGG	3 cut(s)	32, 100, 448
BseBI	CCWGG	4 cut(s)	191, 471, 555, 711
BseDI	CCNNGG	3 cut(s)	171, 189, 710
BseGI	GGATG	2 cut(s)	28, 1082
BseLI	CCNNNNNNNGG	6 cut(s)	142, 196, 307, 454, 476, 1073
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	32, 100, 448
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	626, 683, 907
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	5 cut(s)	225, 447, 709, 820, 1005
BsiHKAI	GWGCWC	1 cut(s)	215
BslFI	GGGAC	4 cut(s)	140, 311, 728, 923
BslI	CCNNNNNNNGG	6 cut(s)	142, 196, 307, 454, 476, 1073
BsmAI	GTCTC	2 cut(s)	418, 878
BsmFI	GGGAC	4 cut(s)	140, 311, 728, 923
BsnI	GGCC	5 cut(s)	225, 447, 709, 820, 1005
Bso31I	GGTCTC	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	4 cut(s)	340, 366, 904, 1068
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	2 cut(s)	12, 308
BspANI	GGCC	5 cut(s)	225, 447, 709, 820, 1005
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	299
BspMI	ACCTGC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	32, 100, 448
BssECI	CCNNGG	3 cut(s)	171, 189, 710
BssMI	GATC	4 cut(s)	340, 366, 904, 1068
Bst2UI	CCWGG	4 cut(s)	191, 471, 555, 711
Bst4CI	ACNGT	4 cut(s)	164, 457, 527, 973
Bst6I	CTCTTC	2 cut(s)	479, 1047
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	227, 408, 420
BstF5I	GGATG	2 cut(s)	28, 1082
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	4 cut(s)	343, 369, 907, 1071
BstMAI	GTCTC	2 cut(s)	418, 878
BstMBI	GATC	4 cut(s)	340, 366, 904, 1068
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 620
BstNI	CCWGG	4 cut(s)	191, 471, 555, 711
BstSCI	CCNGG	4 cut(s)	189, 469, 553, 709
BstSFI	CTRYAG	1 cut(s)	993
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	626, 683, 907
BsuRI	GGCC	5 cut(s)	225, 447, 709, 820, 1005
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	28, 1082
BtsIMutI	CAGTG	3 cut(s)	39, 169, 532
BtuMI	TCGCGA	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	554
Cfr13I	GGNCC	3 cut(s)	298, 551, 790
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	784
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	7 cut(s)	125, 142, 148, 221, 770, 787, 794
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	3 cut(s)	227, 408, 420
DpnI	GATC	4 cut(s)	342, 368, 906, 1070
DpnII	GATC	4 cut(s)	340, 366, 904, 1068
DraI	TTTAAA	1 cut(s)	958
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	479, 1047
EarI	CTCTTC	2 cut(s)	479, 1047
Ecl136II	GAGCTC	1 cut(s)	213
Eco147I	AGGCCT	2 cut(s)	709, 820
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	3 cut(s)	298, 551, 790
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	298, 551
EcoRII	CCWGG	4 cut(s)	189, 469, 553, 709
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	7 cut(s)	128, 145, 151, 224, 773, 790, 797
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	4 cut(s)	140, 311, 728, 923
FatI	CATG	7 cut(s)	124, 141, 147, 220, 769, 786, 793
FauI	CCCGC	1 cut(s)	5
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	3 cut(s)	615, 672, 921
FokI	GGATG	2 cut(s)	15, 1069
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	615, 672, 921
FspBI	CTAG	2 cut(s)	83, 890
GluI	GCNGC	3 cut(s)	615, 672, 921
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	225, 447, 709, 820, 1005
HgaI	GACGC	1 cut(s)	117
Hin1II	CATG	7 cut(s)	128, 145, 151, 224, 773, 790, 797
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	2 cut(s)	167, 383
HphI	GGTGA	3 cut(s)	248, 848, 914
Hpy166II	GTNNAC	2 cut(s)	453, 1015
Hpy188I	TCNGA	5 cut(s)	80, 172, 345, 366, 1063
Hpy188III	TCNNGA	5 cut(s)	262, 370, 415, 544, 908
Hpy8I	GTNNAC	2 cut(s)	453, 1015
Hpy99I	CGWCG	2 cut(s)	182, 268
HpyAV	CCTTC	4 cut(s)	319, 571, 651, 959
HpyCH4III	ACNGT	4 cut(s)	164, 457, 527, 973
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	44, 614, 773, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 620
HpyF3I	CTNAG	3 cut(s)	227, 408, 420
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	7 cut(s)	128, 145, 151, 224, 773, 790, 797
Kzo9I	GATC	4 cut(s)	340, 366, 904, 1068
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	3 cut(s)	626, 683, 907
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	2 cut(s)	83, 890
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	6 cut(s)	181, 236, 280, 316, 721, 1078
MalI	GATC	4 cut(s)	342, 368, 906, 1070
MboI	GATC	4 cut(s)	340, 366, 904, 1068
MboII	GAAGA	6 cut(s)	59, 70, 385, 496, 851, 1064
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	5 cut(s)	216, 353, 564, 812, 1043
MluNI	TGGCCA	1 cut(s)	447
MmeI	TCCRAC	2 cut(s)	58, 156
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	4 cut(s)	117, 777, 815, 957
MslI	CAYNNNNRTG	2 cut(s)	146, 828
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	191, 471, 555, 711
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	4 cut(s)	191, 471, 555, 711
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	18, 620
NdeII	GATC	4 cut(s)	340, 366, 904, 1068
NlaIII	CATG	7 cut(s)	128, 145, 151, 224, 773, 790, 797
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	181, 236, 721
NruI	TCGCGA	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	357
PceI	AGGCCT	2 cut(s)	709, 820
PfeI	GAWTC	2 cut(s)	167, 383
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	616, 673, 922
PpuMI	RGGWCCY	2 cut(s)	298, 551
PshBI	ATTAAT	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	2 cut(s)	298, 551
Psp6I	CCWGG	4 cut(s)	189, 469, 553, 709
PspGI	CCWGG	4 cut(s)	189, 469, 553, 709
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	3 cut(s)	298, 551, 790
PspPPI	RGGWCCY	2 cut(s)	298, 551
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	602
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	2 cut(s)	146, 828
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	117, 777, 815, 957
SatI	GCNGC	3 cut(s)	615, 672, 921
Sau3AI	GATC	4 cut(s)	340, 366, 904, 1068
Sau96I	GGNCC	3 cut(s)	298, 551, 790
ScrFI	CCNGG	4 cut(s)	191, 471, 555, 711
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	865
SfcI	CTRYAG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	3 cut(s)	298, 551, 790
SmiMI	CAYNNNNRTG	2 cut(s)	146, 828
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	5 cut(s)	216, 353, 564, 812, 1043
SseBI	AGGCCT	2 cut(s)	709, 820
SsiI	CCGC	2 cut(s)	12, 308
SspMI	CTAG	2 cut(s)	83, 890
SstI	GAGCTC	1 cut(s)	215
StuI	AGGCCT	2 cut(s)	709, 820
StyD4I	CCNGG	4 cut(s)	189, 469, 553, 709
TaaI	ACNGT	4 cut(s)	164, 457, 527, 973
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	350, 357, 416, 482, 849
TasI	AATT	5 cut(s)	216, 353, 564, 812, 1043
TfiI	GAWTC	2 cut(s)	167, 383
Tru1I	TTAA	4 cut(s)	117, 777, 815, 957
Tru9I	TTAA	4 cut(s)	117, 777, 815, 957
TscAI	CASTG	3 cut(s)	39, 169, 532
TseFI	GTSAC	3 cut(s)	181, 236, 721
TseI	GCWGC	3 cut(s)	614, 671, 920
Tsp45I	GTSAC	3 cut(s)	181, 236, 721
TspDTI	ATGAA	7 cut(s)	209, 421, 590, 647, 652, 825, 1056
TspRI	CASTG	3 cut(s)	39, 169, 532
Tth111I	GACNNNGTC	1 cut(s)	719
VpaK11BI	GGWCC	3 cut(s)	298, 551, 790
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	2 cut(s)	353, 1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	2 cut(s)	83, 890
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.