Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

14741919 .. 14749067

Gene Structure 7149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG080800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGCGAGTAATGTGTGTTTTCTTTGCTGGCTTTCTTGCCTTGACTATATATTTTGGATGCAGGGGGAAACAAGCTCGCTGGGAGAGAACATTTCTTTGTCTACATCAGGGAAAACTGGTGAATACAGCATGCTATAAATGTCAAGAGCAGTTGCTATTCTCCATTCCATATACTCTGCTCACTTTCGCTACGAAAGAGATTGATGTAACGGAATGGAAAGGGGCAGGTGTTGGTGTTACGCAGAAGGATTTGGCGAAAGATCAGAACTCGAAATTCGAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGAGGTCTTGACTGAGGAGGACTTCACAGGAAAGAAGTCTGGCCAGTCTACAGTTGTTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATTTGGTTCGTTTACAGAAGCTTTTAAGGGACTTGGGGAGGTTGCAACAGCAGTGGCAAAGACTACTCAAGCAAGTGATATTGCTATGTGCTTGCTTCCTCGGAGGGGCTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

184

Amino Acids

20.17

Weight (kDa)

9.11

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	78 - 177	2e-11	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	218
AccI	GTMKAC	2 cut(s)	103, 377
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	401, 542
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	3 cut(s)	77, 301, 458
AluI	AGCT	3 cut(s)	77, 301, 458
AoxI	GGCC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 542
Bse1I	ACTGG	2 cut(s)	123, 373
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	401, 542
BseMII	CTCAG	2 cut(s)	321, 333
BseNI	ACTGG	2 cut(s)	123, 373
BseRI	GAGGAG	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	81
BshFI	GGCC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	401, 542
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	322, 334
BspMI	ACCTGC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	123, 373
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	4 cut(s)	31, 79, 133, 530
BstDEI	CTNAG	2 cut(s)	330, 342
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	4 cut(s)	31, 79, 133, 530
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	330, 342
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	1 cut(s)	135
FaiI	YATR	7 cut(s)	50, 52, 133, 138, 172, 174, 524
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	1 cut(s)	131
FblI	GTMKAC	2 cut(s)	103, 377
FokI	GGATG	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	104, 378, 450
Hpy188I	TCNGA	3 cut(s)	267, 288, 540
Hpy188III	TCNNGA	2 cut(s)	146, 337
Hpy8I	GTNNAC	3 cut(s)	104, 378, 450
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	63, 482
HpyF3I	CTNAG	2 cut(s)	330, 342
Hsp92II	CATG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	262
LweI	GCATC	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	208, 238
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	307, 421
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	2 cut(s)	275, 437
MluNI	TGGCCA	1 cut(s)	372
MnlI	CCTC	7 cut(s)	325, 337, 340, 405, 469, 534, 546
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	135
NspI	RCATGY	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	462
Sau3AI	GATC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	6 cut(s)	79, 232, 303, 336, 460, 480
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	275, 437
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	272, 279, 407
TasI	AATT	2 cut(s)	275, 437
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	135
XmiI	GTMKAC	2 cut(s)	103, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.