Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

12576206 .. 12589628

Gene Structure 13423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG109300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTTTATCATGCATTTAATGGGTACATGGACCGTGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGTGTGAAGATAGGCTCGGTGGATATGCCTTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGGTGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATGGCTTGCGCCTCTCCAACGGCACTCAGTCTCCCCCTCTGCCGTCTCCCATCACCCGCACCAATCTCTTCTTGCCCCGGCTCCCACCCGGAAACAGTTCATCTCTTCGTCGCCAGAGTTCACCCTTCGTCCGGTGCTCCGGAGACTCTGACATATTTGACGCCAAGGTGTTCCGTAAGAACCTGAGCAGAAGCAAGAACTACAATCGCAGAGGGTTCGGGCACCAGGAAGAGACCCTCCAGCTAATGAACCACCAGTACACCAGTAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

9.51

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 67	5.6e-17	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	26, 464
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	134, 448, 475
AluI	AGCT	3 cut(s)	134, 448, 475
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	5 cut(s)	119, 240, 255, 342, 431
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	283, 294
AsuHPI	GGTGA	3 cut(s)	155, 250, 318
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	232, 241
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	2 cut(s)	283, 294
BcoDI	GTCTC	5 cut(s)	119, 240, 255, 342, 431
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	283, 294, 431
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	287, 428
BmrFI	CCNGG	3 cut(s)	283, 294, 431
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	283, 294
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	281, 369
BsaWI	WCCGGW	2 cut(s)	336, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	460, 468
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	281, 369
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	245, 380
BseNI	ACTGG	2 cut(s)	460, 468
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	4 cut(s)	283, 294, 337, 345
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	5 cut(s)	119, 240, 255, 342, 431
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	344, 429
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	244, 381
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	287, 428
BspT107I	GGYRCC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	460, 468
BssECI	CCNNGG	2 cut(s)	281, 369
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	35, 302
Bst6I	CTCTTC	3 cut(s)	278, 315, 429
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	231, 389
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	5 cut(s)	119, 240, 255, 342, 431
BstMBI	GATC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	281, 292, 429
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	25, 463
CviAII	CATG	2 cut(s)	11, 28
CviJI	RGCY	8 cut(s)	61, 88, 134, 156, 210, 286, 448, 475
CviKI_1	RGCY	8 cut(s)	61, 88, 134, 156, 210, 286, 448, 475
CviQI	GTAC	2 cut(s)	25, 463
DdeI	CTNAG	2 cut(s)	231, 389
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	278, 315, 429
EarI	CTCTTC	3 cut(s)	278, 315, 429
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	14, 31
FaiI	YATR	5 cut(s)	12, 29, 99, 359, 478
FatI	CATG	2 cut(s)	10, 27
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	4 cut(s)	283, 294, 337, 345
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	14, 31
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	4 cut(s)	283, 294, 337, 345
HphI	GGTGA	3 cut(s)	155, 250, 318
Hpy166II	GTNNAC	2 cut(s)	326, 465
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	2 cut(s)	326, 465
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	200, 340
HpyCH4III	ACNGT	2 cut(s)	35, 302
HpyCH4V	TGCA	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	231, 389
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	14, 31
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	291, 347
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	92, 265, 302, 446
MhlI	GDGCHC	2 cut(s)	344, 429
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	72, 175, 227, 252, 410, 452
Mph1103I	ATGCAT	1 cut(s)	16
MroI	TCCGGA	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	4 cut(s)	18, 56, 104, 198
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	4 cut(s)	283, 294, 337, 345
MspR9I	CCNGG	3 cut(s)	283, 294, 431
MvaI	CCWGG	1 cut(s)	431
NciI	CCSGG	2 cut(s)	283, 294
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	14, 31
NlaIV	GGNNCC	2 cut(s)	287, 428
NsiI	ATGCAT	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	287, 428
PspPI	GGNCC	1 cut(s)	31
PsrI	GAACNNNNNNTAC	2 cut(s)	446, 478
RsaI	GTAC	2 cut(s)	26, 464
RsaNI	GTAC	2 cut(s)	25, 463
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	18, 56, 104, 198
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	283, 294, 431
SduI	GDGCHC	2 cut(s)	344, 429
SetI	ASST	6 cut(s)	136, 192, 375, 390, 450, 477
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	53
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	281, 292, 429
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	35, 302
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	4 cut(s)	18, 56, 104, 198
Tru9I	TTAA	4 cut(s)	18, 56, 104, 198
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	66, 294, 467
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.