Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

67938651 .. 67955155

Gene Structure 16505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG462100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAAAACAGATGCTGAAGGCAGACTGACTTTGGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGGCGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAATTAAACCTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

104

Amino Acids

11.14

Weight (kDa)

5.0

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 41	2e-12	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	38 - 100	8.8e-17	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	264
AcuI	CTGAAG	2 cut(s)	105, 291
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	44, 245
AluI	AGCT	2 cut(s)	44, 245
Alw26I	GTCTC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	23, 170
ApeKI	GCWGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	200, 266
AvaII	GGWCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	265, 273
BlsI	GCNGC	2 cut(s)	266, 274
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	70, 217
BoxI	GACNNNNGTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	26, 199
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	26, 199
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	25, 172
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	25, 172
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	25, 172
BssECI	CCNNGG	2 cut(s)	26, 199
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	27
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	25, 172
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	122, 139, 146
CviJI	RGCY	6 cut(s)	25, 44, 172, 198, 245, 267
CviKI_1	RGCY	6 cut(s)	25, 44, 172, 198, 245, 267
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco147I	AGGCCT	2 cut(s)	25, 172
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	105, 291
EcoRII	CCWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	3 cut(s)	125, 142, 149
FaiI	YATR	5 cut(s)	20, 123, 140, 147, 210
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	121, 138, 145
Fnu4HI	GCNGC	2 cut(s)	265, 273
Fsp4HI	GCNGC	2 cut(s)	265, 273
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	2 cut(s)	265, 273
HaeIII	GGCC	2 cut(s)	25, 172
Hin1II	CATG	3 cut(s)	125, 142, 149
HphI	GGTGA	2 cut(s)	200, 266
HpyAV	CCTTC	2 cut(s)	80, 315
HpyCH4V	TGCA	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	125, 142, 149
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	12, 39, 91
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	70, 217
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	2 cut(s)	164, 297
MnlI	CCTC	5 cut(s)	15, 58, 183, 209, 286
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	4 cut(s)	129, 167, 300, 313
MslI	CAYNNNNRTG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	125, 142, 149
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	127
PceI	AGGCCT	2 cut(s)	25, 172
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	266, 274
PshAI	GACNNNNGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	129, 167, 300, 313
SatI	GCNGC	2 cut(s)	265, 273
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	5 cut(s)	19, 46, 69, 247, 307
SfaNI	GCATC	2 cut(s)	70, 217
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	164, 297
SseBI	AGGCCT	2 cut(s)	25, 172
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	2 cut(s)	25, 172
StyD4I	CCNGG	1 cut(s)	25
TasI	AATT	2 cut(s)	164, 297
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	4 cut(s)	129, 167, 300, 313
Tru9I	TTAA	4 cut(s)	129, 167, 300, 313
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	177
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.