Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

22094864 .. 22095157

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAGCTCACTTTCGCGACAAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGGTTTGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTAAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTAGTCTTGGTTCGAATAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGGTCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

97

Amino Acids

10.63

Weight (kDa)

8.62

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	34 - 90	3.1e-10	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	2 cut(s)	7, 133
AluI	AGCT	2 cut(s)	7, 133
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	52
AsuII	TTCGAA	2 cut(s)	111, 236
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	2 cut(s)	111, 236
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 208, 230
Bse1I	ACTGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
BseNI	ACTGG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	2 cut(s)	111, 236
Bsp143I	GATC	1 cut(s)	94
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspT104I	TTCGAA	2 cut(s)	111, 236
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	211
BstBI	TTCGAA	2 cut(s)	111, 236
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	162, 174
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	94
BstUI	CGCG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	201
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	52
CviJI	RGCY	7 cut(s)	7, 133, 161, 201, 220, 249, 259
CviKI_1	RGCY	7 cut(s)	7, 133, 161, 201, 220, 249, 259
DdeI	CTNAG	2 cut(s)	162, 174
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	52
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	99, 120, 286
Hpy188III	TCNNGA	2 cut(s)	16, 169
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	162, 174
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	6 cut(s)	68, 119, 174, 183, 215, 265
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	34, 70
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	2 cut(s)	81, 172
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	201
MvnI	CGCG	1 cut(s)	17
NdeII	GATC	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	17
NspV	TTCGAA	2 cut(s)	111, 236
PfeI	GAWTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
RruI	TCGCGA	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	52
SetI	ASST	5 cut(s)	9, 57, 135, 168, 284
SfuI	TTCGAA	2 cut(s)	111, 236
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	4 cut(s)	104, 111, 170, 236
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.